PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g067290.3

Common Name

MTR_4g067290

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 258aa MW: 29180.8 Da PI: 5.3026

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g067290.3	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	90.7	2e-28	91	178	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA evGF +r+sk ++s+++g+ + r +vC+keg+r ++k++ k r+raetr+gC+a+++++k ++gkw++tk+++eH+H+l+p Medtr4g067290.3 91 FYNAYAAEVGFIIRVSKLSRSRKDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNP 178 ****************************************9988..9************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-25	91	178	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 258 aa Download sequence Send to blast
MKLEFEIDDS VNGDTVRDGA MVEAGSIPDE YIEEESSAEP TYKQDQDDNV AQDSSGGGLI 60 IPAAVPTLPG ASAEEPYVGQ EFESEAAAHA FYNAYAAEVG FIIRVSKLSR SRKDGTAIGR 120 ALVCNKEGYR MPDKREKIVR QRAETRVGCR AMIMMRKINS GKWVITKFVK EHTHPLNPGS 180 SRRDMFEIYP SQNEHDKIRE LSQQLAIEKK RSVTYKRQLE VIFDYIEEHN VGLSRKMQRI 240 VDSVKEMEPK EEEEHNH*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.18430	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g067290.3

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456303.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_024637682.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
Refseq	XP_024637683.1	0.0	protein FAR1-RELATED SEQUENCE 7 isoform X1
TrEMBL	A0A072UKR7	0.0	A0A072UKR7_MEDTR; FAR-RED impaired response-like protein
STRING	XP_004507429.1	1e-125	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	7e-83	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Medtr4g067290.3
Entrez Gene	25492669

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]