PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g067290.4
Common NameMTR_4g067290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 254aa    MW: 28724.2 Da    PI: 5.1579
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g067290.4genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR190.72e-2889176291
             FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 
                      fYn+YA evGF +r+sk ++s+++g+ + r +vC+keg+r ++k++  k  r+raetr+gC+a+++++k ++gkw++tk+++eH+H+l+p
  Medtr4g067290.4  89 FYNAYAAEVGFIIRVSKLSRSRKDGTAIGRALVCNKEGYRMPDKRE--KIVRQRAETRVGCRAMIMMRKINSGKWVITKFVKEHTHPLNP 176
                      ******************************************9988..9**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.4E-2589176IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MEFEIDDSVN GDTVRDGAMV EAGSIPDEYI EEESSAEPTY KQDQDDNVAQ DSSGGGLIIP  60
AAVPTLPGAS AEEPYVGQEF ESEAAAHAFY NAYAAEVGFI IRVSKLSRSR KDGTAIGRAL  120
VCNKEGYRMP DKREKIVRQR AETRVGCRAM IMMRKINSGK WVITKFVKEH THPLNPGSSR  180
RDMFEIYPNE HDKIRELSQQ LAIEKKRSVT YKRQLEVIFD YIEEHNVGLS RKMQRIVDSV  240
KEMEPKEEEE HNH*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.184300.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g067290.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456302.10.0protein FAR1-RELATED SEQUENCE 7 isoform X4
TrEMBLA0A072UWW60.0A0A072UWW6_MEDTR; FAR-RED impaired response-like protein
STRINGXP_004507429.11e-127(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.26e-85FAR1 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]