PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g068310.1
Common NameMTR_4g068310
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 199aa    MW: 22612.6 Da    PI: 10.2723
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g068310.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3407e-13191021197
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                      ++++++ +p k + + g++  ++  ++l  +sg++Wevk+   kk +  yv   GW++F k+n +   +f+vF+++g++ f  +v ++
  Medtr4g068310.1  19 FNTKCMKVPPKIVMDLGEEFWKKASIILVCSSGEKWEVKI--LKKANDiYVRNFGWQKFLKDNSVGLEEFLVFTYIGENLF--NVEIY 102
                      5556688999999888877788899***************..666666599999**********************98777..66665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-175105IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.26E-175106IPR015300DNA-binding pseudobarrel domain
CDDcd100171.56E-109102No hitNo description
SMARTSM010199.7E-1111105IPR003340B3 DNA binding domain
PfamPF023628.2E-1118102IPR003340B3 DNA binding domain
PROSITE profilePS5086310.40544105IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDHEQQDKPS FFAIIKEGFN TKCMKVPPKI VMDLGEEFWK KASIILVCSS GEKWEVKILK  60
KANDIYVRNF GWQKFLKDNS VGLEEFLVFT YIGENLFNVE IYGKNGLEKP CFKKKQEVVA  120
APIVAKRKRG RPRRNPAGVE EEKEEAAPTI VAKTKMVQRK YPSRVCVRKE KAETLATIVT  180
KKGIPRKNPA PLSVILVD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1112128KKKQEVVAAPIVAKRKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g068310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1378250.0AC137825.26 Medicago truncatula clone mth2-23j1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606841.11e-143B3 domain-containing protein At3g17010
RefseqXP_024637208.11e-143B3 domain-containing protein At3g17010
RefseqXP_024637209.11e-143B3 domain-containing protein At3g17010
TrEMBLG7JEY01e-141G7JEY0_MEDTR; B3 DNA-binding domain protein
STRINGAES890381e-142(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14239914
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18000.12e-15VERDANDI
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]