PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g071200.1
Common NameMTR_4g071200
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family DBB
Protein Properties Length: 225aa    MW: 25267.4 Da    PI: 6.5929
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g071200.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box23.89e-08443538
         zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Ht 38
                      C+ ++++e++lfC  ++  lC++C  ++H +       H+
  Medtr4g071200.1  4 QCDACHKQEASLFCPADEAALCNQCDRNIH-YankvsakHK 43
                     7*****************************.4456666765 PP
2zf-B_box29.12e-095688436
         zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg 36
                     + C+ ++e ++ lfC++++  lC++C   +H+ 
  Medtr4g071200.1 56 PLCDICKERRAYLFCKEDRAILCRECDIPIHEI 88
                     78***************************9954 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.623147IPR000315B-box-type zinc finger
CDDcd000218.72E-7347No hitNo description
SMARTSM003368.3E-9447IPR000315B-box-type zinc finger
PfamPF006431.0E-5444IPR000315B-box-type zinc finger
PROSITE profilePS5011910.38153100IPR000315B-box-type zinc finger
SMARTSM003361.1E-1353100IPR000315B-box-type zinc finger
CDDcd000211.18E-856100No hitNo description
PfamPF006431.4E-75696IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MKIQCDACHK QEASLFCPAD EAALCNQCDR NIHYANKVSA KHKRFTLHHP TSKDTPLCDI  60
CKERRAYLFC KEDRAILCRE CDIPIHEINK LTKQHNRFLL TGVKIGASSS CSNPTISNGS  120
ELRTSSPRPS SFSSENNSCS QSSFKENMVC DTVSTSSISE YLIETIPGYC MEDLFDASFA  180
PNNVFCNKDY YEQNQDLQVI NMSDWVPQSQ VRFPQLSANS NVPN*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.155820.0root
Functional Description ? help Back to Top
Source Description
UniProtActs as positive regulator of seedling photomorphogenesis. Plays a negative role in brassinosteroid responses. {ECO:0000269|PubMed:22535582}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g071200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1407420.0BT140742.1 Medicago truncatula clone JCVI-FLMt-15L18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607012.11e-167B-box zinc finger protein 20
SwissprotQ0IGM72e-57BBX20_ARATH; B-box zinc finger protein 20
TrEMBLG7JIM61e-166G7JIM6_MEDTR; Putative transcription factor interactor and regulator Znf-B family
STRINGAES892091e-166(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14483494
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.14e-55DBB family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Wei CQ, et al.
    The Arabidopsis B-box protein BZS1/BBX20 interacts with HY5 and mediates strigolactone regulation of photomorphogenesis.
    J Genet Genomics, 2016. 43(9): p. 555-563
    [PMID:27523280]
  3. Thussagunpanit J, et al.
    Involvement of STH7 in light-adapted development in Arabidopsis thaliana promoted by both strigolactone and karrikin.
    Biosci. Biotechnol. Biochem., 2017. 81(2): p. 292-301
    [PMID:27858514]