PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g073310.1
Common NameMTR_4g073310
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 228aa    MW: 25671.8 Da    PI: 9.4995
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g073310.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.83.8e-057395123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++Cp C+k+Fs++  +  H+ +H
  Medtr4g073310.1 73 HRCPVCNKVFSSNKAFCGHMILH 95
                     79******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.609.3E-42956IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.46E-73195No hitNo description
SMARTSM003550.0463355IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.8663360IPR007087Zinc finger, C2H2
PfamPF139121.2E-103357IPR007087Zinc finger, C2H2
PROSITE patternPS0002803555IPR007087Zinc finger, C2H2
PROSITE profilePS501578.74673100IPR007087Zinc finger, C2H2
SMARTSM003550.00237395IPR015880Zinc finger, C2H2-like
PfamPF139121.6E-57397IPR007087Zinc finger, C2H2
PROSITE patternPS0002807596IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MRKKGTPSCS FYNPCSSFHS FHDNEKSQGP RMYECELCGK RFNSGNALGG HKTSHRRSHL  60
QRHDKYDDEK QKHRCPVCNK VFSSNKAFCG HMILHHEKGS KSIHSPTTFL EQFQFQVAQT  120
LFNMSCAAAG GGGDHGQVHK KFKVSSNVDN DKIKVKENNN NNSKKSLRLI FKIKDNKVWQ  180
CIQGEEKKKN NEGGGTGMEQ SSNELKPKGV VMNFDLNELP TEDVAHE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g073310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1212350.0AC121235.20 Medicago truncatula clone mth2-21k24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLG7JNE61e-168G7JNE6_MEDTR; C2H2-type zinc-finger protein
STRINGAES893871e-127(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15177311
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.16e-11C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]