PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g074310.1
Common NameMTR_4g074310
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 226aa    MW: 25671.5 Da    PI: 4.646
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g074310.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS32.21.4e-1021137120
             GRAS   7 ecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                      ++A+ +s g++e a+++L+  s++++p+ +  + l  +++ AL++r+ +    + +  p  e     s+e++ +++l+ + s ++k+s+++aN 
  Medtr4g074310.1   2 DVATTISGGKMEYAKEILSPFSQTQNPKLNFDRWLLDCMALALKSRMDN----IENPPPIMELF---SKEHVESTHLLLDHSLCFKLSFMAANI 88 
                      789*********************************************9....66555555555...9999999******************** PP

             GRAS 101 aIle.avege....ervHiiDfdis 120
                      aIle a+e      + v ++Dfdi 
  Medtr4g074310.1  89 AILEvAFEDTtkrvKNVCVVDFDIA 113
                      ***94444447666788******96 PP
2GRAS213.5e-07128192164235
             GRAS 164 rLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvksls 235
                      +L+ + e lg ++ef+         +e++  ++++++ + Vn++++l++++des+s+e++rd++L+ vks++
  Medtr4g074310.1 128 NLKTIGELLGREVEFRN-------RVEFKPVNWDSEDIIGVNFAFNLYKMPDESMSTENPRDTLLRHVKSTR 192
                      55556666666666665.......688899999************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF035144.9E-82113IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MDVATTISGG KMEYAKEILS PFSQTQNPKL NFDRWLLDCM ALALKSRMDN IENPPPIMEL  60
FSKEHVESTH LLLDHSLCFK LSFMAANIAI LEVAFEDTTK RVKNVCVVDF DIAMLKITTL  120
TVNVDDENLK TIGELLGREV EFRNRVEFKP VNWDSEDIIG VNFAFNLYKM PDESMSTENP  180
RDTLLRHVKS TRLALVGWEE LPPINSESSS HPTKVECEIH IENIL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g074310.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003622913.27e-88scarecrow-like protein 8
TrEMBLA0A072UNC91e-165A0A072UNC9_MEDTR; GRAS family transcription factor
STRINGAES791318e-84(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-33SCARECROW-like 8
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]