PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g074320.1

Common Name

MTR_4g074320

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

GRAS

Protein Properties

Length: 189aa MW: 21186.4 Da PI: 8.0757

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g074320.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	60.5	3.4e-19	54	187	2	137
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 ++lL+e A a+s+g+++ a+++L+r s++++++ + + l +++ L++r+++ + + p+ e s+e++ +++l+ + s ++k+s+ Medtr4g074320.1 54 KQLLMETAIAISEGKMKYAKEILSRFSQTQNSKLKFDRWLLDCMASTLKSRVNN----IENPPPVVELF---SKEHAESTHLLLDHSLCFKLSF 140 689************************************************9....66666666665...8999999*********** PP GRAS 96 ltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRpe 137 ++aN aIlea+ ++ + + ++Df+i++G Q+++Llq+L +R + Medtr4g074320.1 141 MAANIAILEAAFEDttksvKNLCVVDFNIGNGKQYINLLQKLHARLN 187 *****8755546556777*******************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	12.705	27	188	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-16	54	187	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 189 aa Download sequence Send to blast
MVNTNNEWLE TIRNLNSFEQ NPIQKPVSFS PTFLATLLYS SPSSIVSPAS EFSKQLLMET 60 AIAISEGKMK YAKEILSRFS QTQNSKLKFD RWLLDCMAST LKSRVNNIEN PPPVVELFSK 120 EHAESTHLLL DHSLCFKLSF MAANIAILEA AFEDTTKSVK NLCVVDFNIG NGKQYINLLQ 180 KLHARLNG*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g074320.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146793	0.0	AC146793.7 Medicago truncatula clone mth2-10p9, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003622913.2	1e-107	scarecrow-like protein 8
TrEMBL	A0A072ULB9	1e-135	A0A072ULB9_MEDTR; GRAS family transcription factor
STRING	AES79131	1e-102	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6266	31	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G52510.1	4e-30	SCARECROW-like 8

Link Out ? help Back to Top
Phytozome	Medtr4g074320.1
Entrez Gene	25492832

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]