PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g076020.1
Common NameMTR_4g076020
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 439aa    MW: 48640.8 Da    PI: 4.82
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g076020.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS330.92.4e-101834293374
             GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshl 96 
                       lLl+cAe+v+ ++l  a+ lL ++ el+sp g++ +R+ ayf++AL+ar+++s+ + y+ l++++ + ++s++ ++a++ ++ vsP++kfsh+
  Medtr4g076020.1  83 GLLLQCAECVAMDNLDFANDLLPEITELSSPFGTSPERVGAYFAQALQARVVSSCLGSYSPLTAKSVTLNQSQRIFNAFQSYNSVSPLVKFSHF 176
                      58******************************************************************9************************* PP

             GRAS  97 taNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                      taNqaI +a++ge+rvHiiD+di+qGlQWp +           p+ R T+ +       +  e+tg+rLa+fA++lg+pfef+++  k  +  e
  Medtr4g076020.1 177 TANQAIFQALDGEDRVHIIDLDIMQGLQWPGFV----------PHPRFTVEE-------DPFESTGRRLADFASSLGLPFEFHPVEGKIGSVTE 253
                      ******************************985..........788988755.......599**********************8777777779 PP

             GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerik 284
                      + +L v+p+Ea++V++++  h l+d ++s       +L+l+ +l+Pk+++ veq+++h ++sFl+rf+eal+yysalfd+l  +l+ +s er++
  Medtr4g076020.1 254 PGQLGVRPNEAIVVHWMH--HCLYDITGSDLG----TLRLLTQLRPKLITTVEQDLSH-AGSFLARFVEALHYYSALFDALGDGLGVDSVERHM 340
                      ****************99..777777777777....**********************.899******************************** PP

             GRAS 285 vErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      vE++llg ei+n++a  g +r+ + + +e+W + l++aGF+pv+l+ + a+qa+lll +++++gy++ ee+gsl lgWkd +L+ +SaW+
  Medtr4g076020.1 341 VEQQLLGCEIRNIIAVGGPKRTGEVK-VERWGDELKRAGFRPVSLRGNPASQASLLLGMFPWRGYTLVEENGSLKLGWKDLSLLIASAWQ 429
                      ********************998887.9*************************************************************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098546.98355409IPR005202Transcription factor GRAS
PfamPF035148.3E-9983429IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0090610Biological Processbundle sheath cell fate specification
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MLQSLVPRPP LSSKPNMNTK RAQREHDDDD TNVHEPSFKR PNYSSEKAVA EHDARDDEQQ  60
QILEHETETE TEGEESTGLK LLGLLLQCAE CVAMDNLDFA NDLLPEITEL SSPFGTSPER  120
VGAYFAQALQ ARVVSSCLGS YSPLTAKSVT LNQSQRIFNA FQSYNSVSPL VKFSHFTANQ  180
AIFQALDGED RVHIIDLDIM QGLQWPGFVP HPRFTVEEDP FESTGRRLAD FASSLGLPFE  240
FHPVEGKIGS VTEPGQLGVR PNEAIVVHWM HHCLYDITGS DLGTLRLLTQ LRPKLITTVE  300
QDLSHAGSFL ARFVEALHYY SALFDALGDG LGVDSVERHM VEQQLLGCEI RNIIAVGGPK  360
RTGEVKVERW GDELKRAGFR PVSLRGNPAS QASLLLGMFP WRGYTLVEEN GSLKLGWKDL  420
SLLIASAWQP SDLIAYVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A1e-151684305379Protein SCARECROW
5b3h_D1e-151684305379Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.179620.0leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, cotyledons, shoot apex, leaves and flowers.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g076020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2025720.0AC202572.7 Medicago truncatula clone mth2-161l14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024638599.10.0LOW QUALITY PROTEIN: scarecrow-like protein 23
SwissprotQ9FHZ11e-169SCL23_ARATH; Scarecrow-like protein 23
TrEMBLG7JPM10.0G7JPM1_MEDTR; GRAS family transcription factor
STRINGAES894880.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20683489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.11e-166GRAS family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]