PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g076140.1
Common NameMTR_4g076140
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family GRAS
Protein Properties Length: 473aa    MW: 53482.6 Da    PI: 7.1215
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g076140.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS446.91.3e-136454691374
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++lLl+cA++v++ +le a+a+L+++s laspdgd+mqR+aayfteALa r+++ ++++ kal++++ s   +se++ ++klf+e +P+lk++
  Medtr4g076140.1  45 LIHLLLTCANHVAACNLEHANATLEQISMLASPDGDTMQRIAAYFTEALADRILKAWPGIHKALNSTRVS--MVSEKILVQKLFFEFFPFLKVA 136
                      689*************************************************************999887..69******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrled 188
                      ++++NqaI ea+ege+++HiiD+++ +++QW++Llq L++ p+gpp+lRiTgv++    +ke l ++++rL   Ae+l+ pf+fn+ v+++le+
  Medtr4g076140.1 137 FVLTNQAIIEAMEGERMIHIIDLNAAEPAQWISLLQVLSAHPDGPPHLRITGVHQ----KKEVLDQVAHRLIAEAEKLDTPFQFNP-VVSKLEN 225
                      *******************************************************....9**************************.799**** PP

             GRAS 189 leleeLrvkpgEalaVnlvlqlhrll............................................................desvsles 222
                      l++e+Lrvk+gEala++++lqlh+ll                                                            + s s+  
  Medtr4g076140.1 226 LDFEKLRVKTGEALAISSILQLHTLLalddetmkrksplllktsngihlqrfhpinrstfdnllekdlissytrspdssssspaslKTSNSM-- 317
                      ********************************************************************************998654333333.. PP

             GRAS 223 erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWr 316
                      +++ +L++++slsPkv+vv+eq+++hn++ F +r+leal+ y+alfd+le+++pr+s er  vE+ l+g+ei+n++aceg er+erhe+l kW 
  Medtr4g076140.1 318 NTEMFLNALWSLSPKVMVVTEQDSNHNGSHFTDRLLEALHSYAALFDCLESTIPRTSLERFRVEKLLFGEEIKNIIACEGLERKERHEKLDKWF 411
                      5699****************************************************************************************** PP

             GRAS 317 erleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                      +r++ aGF++ pls++   qa++ ++ ++ + yr++ee+g+++++W+dr+L+s+SaWr
  Medtr4g076140.1 412 MRFDLAGFGNEPLSYFGKLQARRFMQSYGCEAYRMKEENGCVLICWQDRSLFSISAWR 469
                      *****************************999*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.30419449IPR005202Transcription factor GRAS
PfamPF035144.5E-13445469IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MLQEGSSSVT SSALKLFSMM PPSSGFGSPH PWLKELKSEE RGLYLIHLLL TCANHVAACN  60
LEHANATLEQ ISMLASPDGD TMQRIAAYFT EALADRILKA WPGIHKALNS TRVSMVSEKI  120
LVQKLFFEFF PFLKVAFVLT NQAIIEAMEG ERMIHIIDLN AAEPAQWISL LQVLSAHPDG  180
PPHLRITGVH QKKEVLDQVA HRLIAEAEKL DTPFQFNPVV SKLENLDFEK LRVKTGEALA  240
ISSILQLHTL LALDDETMKR KSPLLLKTSN GIHLQRFHPI NRSTFDNLLE KDLISSYTRS  300
PDSSSSSPAS LKTSNSMNTE MFLNALWSLS PKVMVVTEQD SNHNGSHFTD RLLEALHSYA  360
ALFDCLESTI PRTSLERFRV EKLLFGEEIK NIIACEGLER KERHEKLDKW FMRFDLAGFG  420
NEPLSYFGKL QARRFMQSYG CEAYRMKEEN GCVLICWQDR SLFSISAWRS RK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-41284711380Protein SCARECROW
5b3h_D2e-41284711380Protein SCARECROW
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.146590.0seed
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, root epidermis, leaves, flowers and siliques. {ECO:0000269|PubMed:10341448, ECO:0000269|PubMed:18500650}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g076140.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1533510.0AC153351.24 Medicago truncatula clone mth2-103a3, complete sequence.
GenBankAC2025720.0AC202572.7 Medicago truncatula clone mth2-161l14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607301.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLG7JQJ60.0G7JQJ6_MEDTR; GRAS family transcription factor
STRINGAES894980.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]