PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g078350.1
Common NameMTR_4g078350
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 209aa    MW: 23774 Da    PI: 5.3641
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g078350.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.74.8e-092068655
                     HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55
                       +E++RR++++  +++L +llP+ +  ++   l   + + +A++YIksL+
  Medtr4g078350.1 20 RLVEKNRRNQMKILYSKLNSLLPNyN--PKELPLALPDQVDEAINYIKSLE 68
                     679*********************66..57777****************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474599.29E-101283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.3061467IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.62E-51672No hitNo description
Gene3DG3DSA:4.10.280.108.1E-91785IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-52068IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.00372073IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MDQFGSDQPS SSNTTKVERR LVEKNRRNQM KILYSKLNSL LPNYNPKELP LALPDQVDEA  60
INYIKSLEAN VQMAMEKKER LLAGKNKRSR EYCLDLPKSP CFEIHEIGSS LQIILTCGLD  120
NQFIFYEIIR VLHEENVDIR SVNSSKVGDN SLLHVVHAEI PPSCVQFGAT KVSERLKSFV  180
YGSSSDVEIQ PELWDFEIGP DDHNMWGF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g078350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607469.11e-154transcription factor bHLH162
TrEMBLG7JTT71e-153G7JTT7_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES896661e-154(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9063498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20970.16e-32bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]