PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g078710.1
Common NameERF-6, MTR_4g078710
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 219aa    MW: 24008.9 Da    PI: 9.7203
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g078710.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP264.62.1e-202776255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +++GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAa+a+++a+++++g
  Medtr4g078710.1 27 HFRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAARAYDNAARQFRG 76
                     58*******.**********8...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.8E-142776IPR001471AP2/ERF domain
CDDcd000182.13E-322784No hitNo description
Gene3DG3DSA:3.30.730.108.4E-332784IPR001471AP2/ERF domain
PROSITE profilePS5103223.632784IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-222784IPR016177DNA-binding domain
SMARTSM003801.0E-402790IPR001471AP2/ERF domain
PRINTSPR003674.3E-112839IPR001471AP2/ERF domain
PRINTSPR003674.3E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MVTKTKNAAN LKIKKPSNNN NNATEIHFRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA  60
EEAARAYDNA ARQFRGPKAK TNFPPPPSDV KEDSPSQSST VESSVPAPDR EVTRREVPTG  120
GSVMDRFPFL SIQQQIMPFA GAGAGAVDGM VPVFFYDPAG RAEFLNQRFT NRFEPEPVQF  180
NIGFGGGVQS DSDSSSVVDC QPKRALNLDL NLAPPMEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-212784260ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A5e-212784563ATERF1
3gcc_A5e-212784563ATERF1
5wx9_A1e-2028841572Ethylene-responsive transcription factor ERF096
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.153620.0leaf| pod| root
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. Transcription factor that binds to the GCC-box pathogenesis-related promoter element. Acts as a transcriptional inhibitor and may regulate other AtERFs (By similarity). {ECO:0000250, ECO:0000269|PubMed:11487705}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00623PBMTransfer from PK19363.1Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g078710.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1515270.0AC151527.13 Medicago truncatula clone mth2-135i19, complete sequence.
GenBankDQ3440240.0DQ344024.1 Medicago truncatula ethylene-responsive element-binding protein (ERF-6) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607496.11e-160ethylene-responsive transcription factor 9
SwissprotQ9FE673e-49ERF80_ARATH; Ethylene-responsive transcription factor 9
TrEMBLQ2I2S81e-159Q2I2S8_MEDTR; Ethylene response factor
STRINGAES896931e-159(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-36erf domain protein 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]
  4. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]