PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g078860.1

Common Name

MTR_4g078860

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

HB-other

Protein Properties

Length: 1764aa MW: 198442 Da PI: 5.6755

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g078860.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.2	1.6e-19	21	76	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR + t++qle+Le+ ++++ yps+++r eLA klgL++rq ++WF+ rR+k++k Medtr4g078860.1 21 VKRKKKTPSQLEILEKTYAMETYPSEATRGELAVKLGLSDRQLQMWFCHRRQKDRK 76 5899**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-19	5	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-16	17	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.167	17	77	IPR001356	Homeobox domain
SMART	SM00389	4.6E-18	19	81	IPR001356	Homeobox domain
CDD	cd00086	2.70E-15	20	76	No hit	No description
Pfam	PF00046	3.9E-17	21	76	IPR001356	Homeobox domain
PROSITE profile	PS50827	16.785	547	606	IPR018501	DDT domain
SMART	SM00571	1.3E-21	547	606	IPR018501	DDT domain
Pfam	PF02791	2.3E-16	548	603	IPR018501	DDT domain
Pfam	PF05066	9.8E-13	728	795	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.9E-7	941	981	IPR028942	WHIM1 domain
Pfam	PF15613	5.6E-11	1122	1194	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1764 aa Download sequence Send to blast
MEACSEGHEN KNKPLEEENR VKRKKKTPSQ LEILEKTYAM ETYPSEATRG ELAVKLGLSD 60 RQLQMWFCHR RQKDRKAVAP AGPSSVPMRD GVVKIEVTDV RNVSDFVSDL RPIGGMDLLG 120 VVPLHEVMGF RRMGAALSEM DSSSSHEPHQ TLHELQAIAF VESQLGESLR DDGPILGMEF 180 DSVPLGAFGA PLEAVAVGQC RQPELSVEAK VYESLDKGVS KILHEYQFIP EQPTVKNEIS 240 ERVTTAIHFS SLGGVPHSRT SLSSGAYFLN GNESAHNVYG VQGQKIPDLN LLSQSHQGRS 300 NHLMPSASGG NDDVPRMNPF VDVTLETQMR AHQVTPKDGG LVPFDSRVIH EEEFSRFQRK 360 RKNEEARMQR ELEVQEKRIR KELVKQEILR QKREEQIKKE MERHDRERQK EEERLLRERQ 420 REEERFLREQ RREQEQREKF LQKESIRIEK LRQKEELQRV KEAARIKAAS ERAVARRMVK 480 DAMDLIEDER LELMELAASK KGLSSILALD YETMQNLESY RDGQTSFPPK SVQLKRAFSI 540 QPWSDSDENV GNLLMVWRFL ITFADILGIW PFTLDELIQA FHDYDPRILG EIHIALLRSI 600 IKDIEDVART PTTGLGGNQN SYTNSGGGHP QVVEGAYVWG FDIRNWQRHL NPLTWPEILR 660 QFALSAGFGP QLKKHNIEQV HPSNNEVNDG KDIISNLRSG AAVENAVAIM QEKGLSNPRR 720 HKHRLTPGTV KYAAFYVLAL EGNRGLNILE IADKIQKSGL RDLTTSKSPE AAIASALSRD 780 TELFERTAPS TYCVRPVYRK DPADSEAIFS AARERIRIFT SGFVGAEVAD DGERDEDCES 840 VMAKDPEIDD LGAQTNTKKE VSNFKEFNAN TVMRSGKDNG EILQTRDSCR EKVDEGLGLI 900 VVESFDGRKD VRTSSEIAVC SNDIANPILK SMDVDENTLG EPWVQGLTEG EYSDLSVEER 960 LHALVALITV TNEGNSIRVA LEERLEAANA LKKQMLAEAQ LDKRHIKEDS FVKMQSFSYL 1020 GNKNEPAVTF PSLGGKQCPS HTVDVKNDKA LLTPCGQREQ IALQENQNPS QNSLLEVNMQ 1080 SQDCSTGPDN YSIQQSIYAA EKARSNLKSY IDHLAEQTYM YRSLPLGLDR RRNRYWQFVT 1140 SASQNDPGAG RIFVELHDGC WKLIDSVEGF DALLVSLDLR GIRESHLHMM LQRIETSFKE 1200 SVRRNVQNGE MIMQKGDTVK NLKKEAVKMA ADLDCSADIN CPTSVCIDDL DTSVASTSFT 1260 IQLGRNEIEN KDAYMKYWDF EKWMRKECLN CSVSSAMKYG KKRCKQLLLI CDLCGHVYFF 1320 REVQCPLCHR IFSTSQGNSS SYEHIAQSEG KMNIDADFFH DSSSSSTRMR LLKILLSVVE 1380 VTLPQEALQP FWTERYRKSW SSNLEASSST EDILQMLTAL EGAIKREYLA SDYETTNELL 1440 DSVCSSGCLP NDIIGGEKIP VLPWVPFTTA AVALRLMDLD ACIFYTSQQK QETKKDSKTG 1500 IVVKLPLKCA AAKNSCDGGA IETSFQTKHT VKNWGALGAG LESYNKGQRT RQGCSHSRGQ 1560 RSQGIVTSSR SNSKKRSTTS NSRKEGRLLG WKGTPNGQGH TRGRRSIRSR KKPAAKMDVI 1620 TSERGTPKDI TELTAISARE EIDGGTEANA LNARNSERSE YEDDVCQATR DKYDFVVDNN 1680 NNNGRYQGGF SGNPDNLIEQ NHYNVDDEED VDMDDSVNND GKYGQVELNV EDYIIGGDSD 1740 EEYNKEENED PDRVGSTSSG YSD*

Sequence ? help Back to Top

Protein Sequence Length: 1764 aa Download sequence Send to blast

MEACSEGHEN KNKPLEEENR VKRKKKTPSQ LEILEKTYAM ETYPSEATRG ELAVKLGLSD  60
RQLQMWFCHR RQKDRKAVAP AGPSSVPMRD GVVKIEVTDV RNVSDFVSDL RPIGGMDLLG  120
VVPLHEVMGF RRMGAALSEM DSSSSHEPHQ TLHELQAIAF VESQLGESLR DDGPILGMEF  180
DSVPLGAFGA PLEAVAVGQC RQPELSVEAK VYESLDKGVS KILHEYQFIP EQPTVKNEIS  240
ERVTTAIHFS SLGGVPHSRT SLSSGAYFLN GNESAHNVYG VQGQKIPDLN LLSQSHQGRS  300
NHLMPSASGG NDDVPRMNPF VDVTLETQMR AHQVTPKDGG LVPFDSRVIH EEEFSRFQRK  360
RKNEEARMQR ELEVQEKRIR KELVKQEILR QKREEQIKKE MERHDRERQK EEERLLRERQ  420
REEERFLREQ RREQEQREKF LQKESIRIEK LRQKEELQRV KEAARIKAAS ERAVARRMVK  480
DAMDLIEDER LELMELAASK KGLSSILALD YETMQNLESY RDGQTSFPPK SVQLKRAFSI  540
QPWSDSDENV GNLLMVWRFL ITFADILGIW PFTLDELIQA FHDYDPRILG EIHIALLRSI  600
IKDIEDVART PTTGLGGNQN SYTNSGGGHP QVVEGAYVWG FDIRNWQRHL NPLTWPEILR  660
QFALSAGFGP QLKKHNIEQV HPSNNEVNDG KDIISNLRSG AAVENAVAIM QEKGLSNPRR  720
HKHRLTPGTV KYAAFYVLAL EGNRGLNILE IADKIQKSGL RDLTTSKSPE AAIASALSRD  780
TELFERTAPS TYCVRPVYRK DPADSEAIFS AARERIRIFT SGFVGAEVAD DGERDEDCES  840
VMAKDPEIDD LGAQTNTKKE VSNFKEFNAN TVMRSGKDNG EILQTRDSCR EKVDEGLGLI  900
VVESFDGRKD VRTSSEIAVC SNDIANPILK SMDVDENTLG EPWVQGLTEG EYSDLSVEER  960
LHALVALITV TNEGNSIRVA LEERLEAANA LKKQMLAEAQ LDKRHIKEDS FVKMQSFSYL  1020
GNKNEPAVTF PSLGGKQCPS HTVDVKNDKA LLTPCGQREQ IALQENQNPS QNSLLEVNMQ  1080
SQDCSTGPDN YSIQQSIYAA EKARSNLKSY IDHLAEQTYM YRSLPLGLDR RRNRYWQFVT  1140
SASQNDPGAG RIFVELHDGC WKLIDSVEGF DALLVSLDLR GIRESHLHMM LQRIETSFKE  1200
SVRRNVQNGE MIMQKGDTVK NLKKEAVKMA ADLDCSADIN CPTSVCIDDL DTSVASTSFT  1260
IQLGRNEIEN KDAYMKYWDF EKWMRKECLN CSVSSAMKYG KKRCKQLLLI CDLCGHVYFF  1320
REVQCPLCHR IFSTSQGNSS SYEHIAQSEG KMNIDADFFH DSSSSSTRMR LLKILLSVVE  1380
VTLPQEALQP FWTERYRKSW SSNLEASSST EDILQMLTAL EGAIKREYLA SDYETTNELL  1440
DSVCSSGCLP NDIIGGEKIP VLPWVPFTTA AVALRLMDLD ACIFYTSQQK QETKKDSKTG  1500
IVVKLPLKCA AAKNSCDGGA IETSFQTKHT VKNWGALGAG LESYNKGQRT RQGCSHSRGQ  1560
RSQGIVTSSR SNSKKRSTTS NSRKEGRLLG WKGTPNGQGH TRGRRSIRSR KKPAAKMDVI  1620
TSERGTPKDI TELTAISARE EIDGGTEANA LNARNSERSE YEDDVCQATR DKYDFVVDNN  1680
NNNGRYQGGF SGNPDNLIEQ NHYNVDDEED VDMDDSVNND GKYGQVELNV EDYIIGGDSD  1740
EEYNKEENED PDRVGSTSSG YSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1601	1611	RGRRSIRSRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.1377	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g078860.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151527	0.0	AC151527.13 Medicago truncatula clone mth2-135i19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003607514.2	0.0	homeobox-DDT domain protein RLT2 isoform X1
TrEMBL	G7JTY2	0.0	G7JTY2_MEDTR; Homeodomain transcriptional regulator
STRING	AES89711	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2523	33	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Medtr4g078860.1
Entrez Gene	11439750

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]