PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g078860.2
Common NameMTR_4g078860
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-other
Protein Properties Length: 1514aa    MW: 170890 Da    PI: 5.8062
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g078860.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.51.3e-192176257
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      kR + t++qle+Le+ ++++ yps+++r eLA klgL++rq ++WF+ rR+k++k
  Medtr4g078860.2 21 VKRKKKTPSQLEILEKTYAMETYPSEATRGELAVKLGLSDRQLQMWFCHRRQKDRK 76
                     5899**************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.3E-19576IPR009057Homeodomain-like
SuperFamilySSF466894.28E-161776IPR009057Homeodomain-like
PROSITE profilePS5007117.1671777IPR001356Homeobox domain
SMARTSM003894.6E-181981IPR001356Homeobox domain
CDDcd000862.34E-152076No hitNo description
PfamPF000463.3E-172176IPR001356Homeobox domain
PROSITE profilePS5082716.785547606IPR018501DDT domain
SMARTSM005711.3E-21547606IPR018501DDT domain
PfamPF027912.0E-16548603IPR018501DDT domain
PfamPF050668.2E-13728795IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.6E-7941981IPR028942WHIM1 domain
PfamPF156134.7E-1111221194IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1514 aa     Download sequence    Send to blast
MEACSEGHEN KNKPLEEENR VKRKKKTPSQ LEILEKTYAM ETYPSEATRG ELAVKLGLSD  60
RQLQMWFCHR RQKDRKAVAP AGPSSVPMRD GVVKIEVTDV RNVSDFVSDL RPIGGMDLLG  120
VVPLHEVMGF RRMGAALSEM DSSSSHEPHQ TLHELQAIAF VESQLGESLR DDGPILGMEF  180
DSVPLGAFGA PLEAVAVGQC RQPELSVEAK VYESLDKGVS KILHEYQFIP EQPTVKNEIS  240
ERVTTAIHFS SLGGVPHSRT SLSSGAYFLN GNESAHNVYG VQGQKIPDLN LLSQSHQGRS  300
NHLMPSASGG NDDVPRMNPF VDVTLETQMR AHQVTPKDGG LVPFDSRVIH EEEFSRFQRK  360
RKNEEARMQR ELEVQEKRIR KELVKQEILR QKREEQIKKE MERHDRERQK EEERLLRERQ  420
REEERFLREQ RREQEQREKF LQKESIRIEK LRQKEELQRV KEAARIKAAS ERAVARRMVK  480
DAMDLIEDER LELMELAASK KGLSSILALD YETMQNLESY RDGQTSFPPK SVQLKRAFSI  540
QPWSDSDENV GNLLMVWRFL ITFADILGIW PFTLDELIQA FHDYDPRILG EIHIALLRSI  600
IKDIEDVART PTTGLGGNQN SYTNSGGGHP QVVEGAYVWG FDIRNWQRHL NPLTWPEILR  660
QFALSAGFGP QLKKHNIEQV HPSNNEVNDG KDIISNLRSG AAVENAVAIM QEKGLSNPRR  720
HKHRLTPGTV KYAAFYVLAL EGNRGLNILE IADKIQKSGL RDLTTSKSPE AAIASALSRD  780
TELFERTAPS TYCVRPVYRK DPADSEAIFS AARERIRIFT SGFVGAEVAD DGERDEDCES  840
VMAKDPEIDD LGAQTNTKKE VSNFKEFNAN TVMRSGKDNG EILQTRDSCR EKVDEGLGLI  900
VVESFDGRKD VRTSSEIAVC SNDIANPILK SMDVDENTLG EPWVQGLTEG EYSDLSVEER  960
LHALVALITV TNEGNSIRVA LEERLEAANA LKKQMLAEAQ LDKRHIKEDS FVKMQSFSYL  1020
GNKNEPAVTF PSLGGKQCPS HTVDVKNDKA LLTPCGQREQ IALQENQNPS QNSLLEVNMQ  1080
SQDCSTGPDN YSIQQSIYAA EKARSNLKSY IDHLAEQTYM YRSLPLGLDR RRNRYWQFVT  1140
SASQNDPGAG RIFVELHDGC WKLIDSVEGF DALLVSLDLR GIRESHLHMM LQRIETSFKE  1200
SVRRNVQNGE MIMQKGDTVK NLKKEAVKMA ADLDCSADIN CPTSVCIDDL DTSVASTSFT  1260
IQLGRNEIEN KDAYMKYWDF EKWMRKECLN CSVSSAMKYG KKRCKQLLLI CDLCGHVYFF  1320
REVQCPLCHR IFSTSQGNSS SYEHIAQSEG KMNIDADFFH DSSSSSTRMR LLKILLSVVE  1380
VTLPQEALQP FWTERYRKSW SSNLEASSST EDILQMLTAL EGAIKREYLA SDYETTNELL  1440
DSVCSSGCLP NDIIGGEKIP VLPWVPFTTA AVALRLMDLD ACIFYTSQQK QETKKDSKTG  1500
IVVVSFLCSP ALI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.13770.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC (PubMed:22694359). Involved in the transcriptional regulation of seed-specific gene expression (PubMed:23872538). {ECO:0000269|PubMed:22694359, ECO:0000269|PubMed:23872538}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g078860.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1515270.0AC151527.13 Medicago truncatula clone mth2-135i19, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607514.20.0homeobox-DDT domain protein RLT2 isoform X1
SwissprotQ9FFH10.0RLT2_ARATH; Homeobox-DDT domain protein RLT2
TrEMBLA0A072UMV10.0A0A072UMV1_MEDTR; Homeodomain transcriptional regulator
STRINGAES897110.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]