PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g078860.4

Common Name

MTR_4g078860

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

HB-other

Protein Properties

Length: 1738aa MW: 195644 Da PI: 5.5602

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g078860.4	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	61.3	1.5e-19	21	76	2	57
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR + t++qle+Le+ ++++ yps+++r eLA klgL++rq ++WF+ rR+k++k Medtr4g078860.4 21 VKRKKKTPSQLEILEKTYAMETYPSEATRGELAVKLGLSDRQLQMWFCHRRQKDRK 76 5899**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.5E-19	5	76	IPR009057	Homeodomain-like
SuperFamily	SSF46689	5.13E-16	17	76	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.167	17	77	IPR001356	Homeobox domain
SMART	SM00389	4.6E-18	19	81	IPR001356	Homeobox domain
CDD	cd00086	2.70E-15	20	76	No hit	No description
Pfam	PF00046	3.8E-17	21	76	IPR001356	Homeobox domain
SMART	SM00571	1.3E-21	521	580	IPR018501	DDT domain
PROSITE profile	PS50827	16.785	521	580	IPR018501	DDT domain
Pfam	PF02791	2.3E-16	522	577	IPR018501	DDT domain
Pfam	PF05066	9.7E-13	702	769	IPR007759	HB1/Asxl, restriction endonuclease HTH domain
Pfam	PF15612	1.8E-7	915	955	IPR028942	WHIM1 domain
Pfam	PF15613	5.5E-11	1096	1168	IPR028941	WHIM2 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1738 aa Download sequence Send to blast
MEACSEGHEN KNKPLEEENR VKRKKKTPSQ LEILEKTYAM ETYPSEATRG ELAVKLGLSD 60 RQLQMWFCHR RQKDRKAVAP AGPSSVPMRD GVVKIEVTDV RNVSDFVSDL RPIGGMDLLG 120 VVPLHEVMGF RRMGAALSEM DSSSSHEPHQ TLHELQAIAF VESQLGESLR DDGPILGMEF 180 DSVPLGAFGA PLEAVAVGQC RQPELSVEAK VYESLDKGVS KILHEYQFIP EQPTVKNEIS 240 ERVTTAIHFS SLGGVPHSRT SLSSGAYFLN GNESAHNVYG VQGGNDDVPR MNPFVDVTLE 300 TQMRAHQVTP KDGGLVPFDS RVIHEEEFSR FQRKRKNEEA RMQRELEVQE KRIRKELVKQ 360 EILRQKREEQ IKKEMERHDR ERQKEEERLL RERQREEERF LREQRREQEQ REKFLQKESI 420 RIEKLRQKEE LQRVKEAARI KAASERAVAR RMVKDAMDLI EDERLELMEL AASKKGLSSI 480 LALDYETMQN LESYRDGQTS FPPKSVQLKR AFSIQPWSDS DENVGNLLMV WRFLITFADI 540 LGIWPFTLDE LIQAFHDYDP RILGEIHIAL LRSIIKDIED VARTPTTGLG GNQNSYTNSG 600 GGHPQVVEGA YVWGFDIRNW QRHLNPLTWP EILRQFALSA GFGPQLKKHN IEQVHPSNNE 660 VNDGKDIISN LRSGAAVENA VAIMQEKGLS NPRRHKHRLT PGTVKYAAFY VLALEGNRGL 720 NILEIADKIQ KSGLRDLTTS KSPEAAIASA LSRDTELFER TAPSTYCVRP VYRKDPADSE 780 AIFSAARERI RIFTSGFVGA EVADDGERDE DCESVMAKDP EIDDLGAQTN TKKEVSNFKE 840 FNANTVMRSG KDNGEILQTR DSCREKVDEG LGLIVVESFD GRKDVRTSSE IAVCSNDIAN 900 PILKSMDVDE NTLGEPWVQG LTEGEYSDLS VEERLHALVA LITVTNEGNS IRVALEERLE 960 AANALKKQML AEAQLDKRHI KEDSFVKMQS FSYLGNKNEP AVTFPSLGGK QCPSHTVDVK 1020 NDKALLTPCG QREQIALQEN QNPSQNSLLE VNMQSQDCST GPDNYSIQQS IYAAEKARSN 1080 LKSYIDHLAE QTYMYRSLPL GLDRRRNRYW QFVTSASQND PGAGRIFVEL HDGCWKLIDS 1140 VEGFDALLVS LDLRGIRESH LHMMLQRIET SFKESVRRNV QNGEMIMQKG DTVKNLKKEA 1200 VKMAADLDCS ADINCPTSVC IDDLDTSVAS TSFTIQLGRN EIENKDAYMK YWDFEKWMRK 1260 ECLNCSVSSA MKYGKKRCKQ LLLICDLCGH VYFFREVQCP LCHRIFSTSQ GNSSSYEHIA 1320 QSEGKMNIDA DFFHDSSSSS TRMRLLKILL SVVEVTLPQE ALQPFWTERY RKSWSSNLEA 1380 SSSTEDILQM LTALEGAIKR EYLASDYETT NELLDSVCSS GCLPNDIIGG EKIPVLPWVP 1440 FTTAAVALRL MDLDACIFYT SQQKQETKKD SKTGIVVKLP LKCAAAKNSC DGGAIETSFQ 1500 TKHTVKNWGA LGAGLESYNK GQRTRQGCSH SRGQRSQGIV TSSRSNSKKR STTSNSRKEG 1560 RLLGWKGTPN GQGHTRGRRS IRSRKKPAAK MDVITSERGT PKDITELTAI SAREEIDGGT 1620 EANALNARNS ERSEYEDDVC QATRDKYDFV VDNNNNNGRY QGGFSGNPDN LIEQNHYNVD 1680 DEEDVDMDDS VNNDGKYGQV ELNVEDYIIG GDSDEEYNKE ENEDPDRVGS TSSGYSD*

Sequence ? help Back to Top

Protein Sequence Length: 1738 aa Download sequence Send to blast

MEACSEGHEN KNKPLEEENR VKRKKKTPSQ LEILEKTYAM ETYPSEATRG ELAVKLGLSD  60
RQLQMWFCHR RQKDRKAVAP AGPSSVPMRD GVVKIEVTDV RNVSDFVSDL RPIGGMDLLG  120
VVPLHEVMGF RRMGAALSEM DSSSSHEPHQ TLHELQAIAF VESQLGESLR DDGPILGMEF  180
DSVPLGAFGA PLEAVAVGQC RQPELSVEAK VYESLDKGVS KILHEYQFIP EQPTVKNEIS  240
ERVTTAIHFS SLGGVPHSRT SLSSGAYFLN GNESAHNVYG VQGGNDDVPR MNPFVDVTLE  300
TQMRAHQVTP KDGGLVPFDS RVIHEEEFSR FQRKRKNEEA RMQRELEVQE KRIRKELVKQ  360
EILRQKREEQ IKKEMERHDR ERQKEEERLL RERQREEERF LREQRREQEQ REKFLQKESI  420
RIEKLRQKEE LQRVKEAARI KAASERAVAR RMVKDAMDLI EDERLELMEL AASKKGLSSI  480
LALDYETMQN LESYRDGQTS FPPKSVQLKR AFSIQPWSDS DENVGNLLMV WRFLITFADI  540
LGIWPFTLDE LIQAFHDYDP RILGEIHIAL LRSIIKDIED VARTPTTGLG GNQNSYTNSG  600
GGHPQVVEGA YVWGFDIRNW QRHLNPLTWP EILRQFALSA GFGPQLKKHN IEQVHPSNNE  660
VNDGKDIISN LRSGAAVENA VAIMQEKGLS NPRRHKHRLT PGTVKYAAFY VLALEGNRGL  720
NILEIADKIQ KSGLRDLTTS KSPEAAIASA LSRDTELFER TAPSTYCVRP VYRKDPADSE  780
AIFSAARERI RIFTSGFVGA EVADDGERDE DCESVMAKDP EIDDLGAQTN TKKEVSNFKE  840
FNANTVMRSG KDNGEILQTR DSCREKVDEG LGLIVVESFD GRKDVRTSSE IAVCSNDIAN  900
PILKSMDVDE NTLGEPWVQG LTEGEYSDLS VEERLHALVA LITVTNEGNS IRVALEERLE  960
AANALKKQML AEAQLDKRHI KEDSFVKMQS FSYLGNKNEP AVTFPSLGGK QCPSHTVDVK  1020
NDKALLTPCG QREQIALQEN QNPSQNSLLE VNMQSQDCST GPDNYSIQQS IYAAEKARSN  1080
LKSYIDHLAE QTYMYRSLPL GLDRRRNRYW QFVTSASQND PGAGRIFVEL HDGCWKLIDS  1140
VEGFDALLVS LDLRGIRESH LHMMLQRIET SFKESVRRNV QNGEMIMQKG DTVKNLKKEA  1200
VKMAADLDCS ADINCPTSVC IDDLDTSVAS TSFTIQLGRN EIENKDAYMK YWDFEKWMRK  1260
ECLNCSVSSA MKYGKKRCKQ LLLICDLCGH VYFFREVQCP LCHRIFSTSQ GNSSSYEHIA  1320
QSEGKMNIDA DFFHDSSSSS TRMRLLKILL SVVEVTLPQE ALQPFWTERY RKSWSSNLEA  1380
SSSTEDILQM LTALEGAIKR EYLASDYETT NELLDSVCSS GCLPNDIIGG EKIPVLPWVP  1440
FTTAAVALRL MDLDACIFYT SQQKQETKKD SKTGIVVKLP LKCAAAKNSC DGGAIETSFQ  1500
TKHTVKNWGA LGAGLESYNK GQRTRQGCSH SRGQRSQGIV TSSRSNSKKR STTSNSRKEG  1560
RLLGWKGTPN GQGHTRGRRS IRSRKKPAAK MDVITSERGT PKDITELTAI SAREEIDGGT  1620
EANALNARNS ERSEYEDDVC QATRDKYDFV VDNNNNNGRY QGGFSGNPDN LIEQNHYNVD  1680
DEEDVDMDDS VNNDGKYGQV ELNVEDYIIG GDSDEEYNKE ENEDPDRVGS TSSGYSD*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	1575	1585	RGRRSIRSRKK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.1377	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g078860.4

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC151527	0.0	AC151527.13 Medicago truncatula clone mth2-135i19, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013456682.1	0.0	homeobox-DDT domain protein RLT2 isoform X3
TrEMBL	A0A072UNU6	0.0	A0A072UNU6_MEDTR; Homeodomain transcriptional regulator
STRING	AES89711	0.0	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G44180.1	0.0	Homeodomain-like transcriptional regulator

Link Out ? help Back to Top
Phytozome	Medtr4g078860.4
Entrez Gene	11439750

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]