PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g079760.1
Common NameMTR_4g079760
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 257aa    MW: 28752.7 Da    PI: 6.0679
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g079760.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.25.4e-1270116354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h+e+ErrRR+riN  +++Lr ++P a      K++Ka+ L ++v+++k+L
  Medtr4g079760.1  70 KNHSEAERRRRARINAHLDTLRCVIPGA-----LKMDKASLLGEVVRHLKEL 116
                      58*************************7.....6****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.26967116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.4E-1070116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-1270119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-1271119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-1173122IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048733.62E-8155226No hitNo description
Gene3DG3DSA:3.30.70.2609.6E-5155206No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MEMEGYDIFG DATERIGKNG FEVNNEVIGS GYGSSFSLVL DRERGELVEE PVKMEGKGVS  60
TTERSVEALK NHSEAERRRR ARINAHLDTL RCVIPGALKM DKASLLGEVV RHLKELKRNE  120
TQACEGLMIP KDNDEISVEE QEGGWNGFPF SIKASLCCEY QPGLLSNIRQ ALDALHLIIM  180
KADIATFGDR MKNVFVVISC EEQNFDAAEY RQFLAGSVHQ ALKSVLSRFS VSQDMLRARK  240
RRRVSIFSSS SLENFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1238242RKRRR
2239243KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g079760.1
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1352310.0AC135231.23 Medicago truncatula clone mth2-28m10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607570.10.0transcription factor bHLH30
TrEMBLG7JCJ80.0G7JCJ8_MEDTR; Putative transcription factor bHLH family
STRINGAES897670.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF106852538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-30bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]