PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g080290.1
Common NameMTR_4g080290
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family FAR1
Protein Properties Length: 106aa    MW: 12137.7 Da    PI: 8.8035
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g080290.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR133.71.2e-104293248
             FAR1  2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk......t 48
                      Y++YA ++GFsvr s+s+   +ng   ++ fvCskeg+  +++++       
  Medtr4g080290.1 42 IYEKYALSIGFSVRSSSSTID-KNGVKRWKYFVCSKEGYLPNKTDDkeqsesI 93
                     7*************9998887.88999***********988777762233332 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.1E-84297IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MDKDTSTSFQ IPQEYECVPN CDDELKPKIG QVFDTLQEGK KIYEKYALSI GFSVRSSSST  60
IDKNGVKRWK YFVCSKEGYL PNKTDDKEQS ESIVKAKRRR ALTRE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g080290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1351601e-156AC135160.22 Medicago truncatula clone mth2-20m5, complete sequence.
GenBankAC1376671e-156AC137667.18 Medicago truncatula clone mth2-30h5, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024634877.12e-62protein FAR1-RELATED SEQUENCE 5-like
TrEMBLG7JCP43e-71G7JCP4_MEDTR; FAR1 DNA-binding domain protein
STRINGAES898132e-68(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1590736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06250.19e-08FAR1-related sequence 7
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]