PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g082345.1
Common NameMTR_4g082345
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 318aa    MW: 36381.4 Da    PI: 4.7881
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g082345.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.2e-184796255
              AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     +y GVr+++ +grWvAeI+d      ++ r +lg+++t eeAa+a+++a++ l+g
  Medtr4g082345.1 47 RYIGVRQRP-SGRWVAEIKDtI----QNIRLWLGTYDTGEEAARAYDEAARLLRG 96
                     799******.7*********33....35***********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.10E-2846103No hitNo description
PfamPF008476.7E-144796IPR001471AP2/ERF domain
PROSITE profilePS5103219.74447104IPR001471AP2/ERF domain
SMARTSM003804.1E-3147110IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.8E-2647103IPR001471AP2/ERF domain
SuperFamilySSF541714.05E-1947104IPR016177DNA-binding domain
PRINTSPR003671.7E-74859IPR001471AP2/ERF domain
PRINTSPR003671.7E-77086IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 318 aa     Download sequence    Send to blast
MMKRRKVREY EGDEKNTEEG NTEWKQIREE AASVAAALLR VRRARKRYIG VRQRPSGRWV  60
AEIKDTIQNI RLWLGTYDTG EEAARAYDEA ARLLRGPNTR TNFFLCQSSH YVPTLPPKIA  120
KILLQRIKTR NTASYIPASA APFPINHCDE QETKAEPEPH FFHQIEENFL ESYDGASYSS  180
SDITTFHCGS GTSEENFNQE GSREDFRLEY HCANNVDDGE NNQVFNGEFE DCDVGLTDFQ  240
FLDTIGSLSH SYSSPFEIAE EMVGPMVDEK FNVDDSLLLR ETFRMKYERK FSACLYTLIG  300
VSECLRLQVG PENGNEF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g082345.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150344e-33AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024638733.10.0ethylene-responsive transcription factor ERF086
TrEMBLA0A072ULZ70.0A0A072ULZ7_MEDTR; AP2/ERF domain transcription factor
STRINGXP_004516576.11e-174(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-15related to AP2 11
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]