PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g082980.1
Common NameMTR_4g082980
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family C2H2
Protein Properties Length: 451aa    MW: 50130.2 Da    PI: 9.2728
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g082980.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011105125323
                      ETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                      C+ Cgk F++   L  H+ +H
  Medtr4g082980.1 105 CKECGKGFPSLKALCGHMASH 125
                      ******************999 PP
2zf-C2H212.50.00046393415123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      y+Cp+C k F++   L  H r+H
  Medtr4g082980.1 393 YECPICYKIFRSGQALGGHKRSH 415
                      99******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.13E-5534No hitNo description
PfamPF139123.1E-5832IPR007087Zinc finger, C2H2
SMARTSM003551.1830IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.325835IPR007087Zinc finger, C2H2
PROSITE patternPS0002801030IPR007087Zinc finger, C2H2
SMARTSM003550.063103125IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.951103130IPR007087Zinc finger, C2H2
SuperFamilySSF576676.55E-8104125No hitNo description
PfamPF139122.1E-7105127IPR007087Zinc finger, C2H2
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576676.55E-8388415No hitNo description
PfamPF139126.9E-11393415IPR007087Zinc finger, C2H2
SMARTSM003550.11393415IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.93393415IPR007087Zinc finger, C2H2
PROSITE patternPS000280395415IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 451 aa     Download sequence    Send to blast
MEEKHRKFVC KYCFKRFPCG KSLGGHIRTH MTEERNNAAA IAAAGGDAAE HVAAGVGDGG  60
NLIYGLRENP KKTMRFVHSH HHHYNHHAAT AAATTLEQNE MIKFCKECGK GFPSLKALCG  120
HMASHSEKEK KINKAMMEED TQSDDTDDDD DDVCVAATTM NLRKSKRRIR FKSITLSNQQ  180
PSSSSVNGGS SSVSEMEQEQ QEEGRFVSES SDNNNEIVLE TKSKIVIRNG NKFVANHARE  240
FVAEKKKKLK MVGIGVSNNS DLRDFRYGSK KIKFVDSSVP NYEFKRPKVE ADKSGFDDCR  300
SKYNNNVTTI FKKSGMMNKD LDHDTKFDSR KKDNDISYDS TTDVESDEEN SSESDSFPAA  360
KSHNSKAVNR KKLSSSNKGK KKKKLKSKKS KEYECPICYK IFRSGQALGG HKRSHFVGGS  420
EENTFVIKQA AAAVAVPCLI DLNLPAPVDE *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1369383RKKLSSSNKGKKKKK
2379388KKKKKLKSKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g082980.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636443.10.0uncharacterized protein LOC11446182
TrEMBLG7JHH20.0G7JHH2_MEDTR; C2H2-type zinc finger protein
STRINGAES899890.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF11013080
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.16e-26C2H2-like zinc finger protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]