PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g083390.1
Common NameMTR_4g083390
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family B3
Protein Properties Length: 194aa    MW: 21383.5 Da    PI: 6.1174
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g083390.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.71.5e-111071653796
                      EEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3  37 tledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                      t+   +g+sW ++++ ++k +++  +  W++F+++n Lk gD +vF+l+++se+e v+kv
  Medtr4g083390.1 107 TILKYRGKSWGMTYNGQNKTKQF-DSVSWEKFAEDNYLKLGDACVFELMKNSEEEIVFKV 165
                      556779********766666665.5669*********************99999998886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.1E-1372169IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.04E-1272169IPR015300DNA-binding pseudobarrel domain
CDDcd100172.40E-1073169No hitNo description
SMARTSM010191.2E-475171IPR003340B3 DNA binding domain
PfamPF023622.4E-9106165IPR003340B3 DNA binding domain
PROSITE profilePS5086310.602107171IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MCHEFVSVAK IHAALDKVCL LGCSVPTCKL LNFIRLNLSS GRVAVGNRAS FPSPSVPTTN  60
MQTGGIEPLT GEPYFHVVLS KTHLSTRYGM GPSSSICEEL PSKEVPTILK YRGKSWGMTY  120
NGQNKTKQFD SVSWEKFAED NYLKLGDACV FELMKNSEEE IVFKVQILRG EEEPILLSEF  180
PGTGERDAPF VID*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.51980.0flower| glandular trichome| leaf| root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g083390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2024671e-175AC202467.11 Medicago truncatula clone mth2-13m8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024637421.13e-87B3 domain-containing protein Os04g0386900 isoform X2
TrEMBLG7JHL31e-141G7JHL3_MEDTR; B3 DNA-binding domain protein
STRINGAES900301e-125(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97222640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.14e-06B3 family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]