PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g084740.1
Common NameMTR_4g084740
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 335aa    MW: 38256.8 Da    PI: 5.0931
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g084740.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF84.85e-27958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien+ nrqvt+skRrng++KKA+ELS+LCd+++a+i+fs++++l  +s
  Medtr4g084740.1  9 KRIENTVNRQVTYSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLNHFS 58
                     79********************************************9997 PP
2K-box31.19.7e-121231901178
            K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqie 78 
                      +++ e lqqe+++L++++++ ++++R++  + L+  s+ eL+  e+++ + l ++ ++K++ll ++++
  Medtr4g084740.1 123 NSEVEDLQQEVNRLQQQLQMVEEQIRKYEPDPLKMTSIAELETGEKNVVETLARVMERKEQLLNNNLS 190
                      67899**********************************************************99875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.777161IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-36160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-28279IPR002100Transcription factor, MADS-box
CDDcd002656.71E-36275No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-25323IPR002100Transcription factor, MADS-box
PfamPF003192.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004047.6E-253859IPR002100Transcription factor, MADS-box
PfamPF014861.1E-7125191IPR002487Transcription factor, K-box
PROSITE profilePS512976.69126219IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRVKLEIKR IENTVNRQVT YSKRRNGLIK KAYELSILCD IDIALIMFSP SNRLNHFSGK  60
RRIEDVLTRY INIPDQERDN AVSFPELPYR SLYCILQYLL RILQQLRNEN DISLHMSNPG  120
DINSEVEDLQ QEVNRLQQQL QMVEEQIRKY EPDPLKMTSI AELETGEKNV VETLARVMER  180
KEQLLNNNLS SYDPSAIQGM PTSFENVSWL QDGGQNQPQI FDTSAPMDPL RDLSSSVYGS  240
FSQGTSSNVV DPRGIGECHV GNPNDGNIQA WPQGYTLYPQ HDIVGTDHHH HNIQDMMLHG  300
QMNMPITASQ VEPPKNDSTE YDQCNQPNHQ LHGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-17190191MEF2 CHIMERA
6bz1_B1e-17190191MEF2 CHIMERA
6bz1_C1e-17190191MEF2 CHIMERA
6bz1_D1e-17190191MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g084740.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636215.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM461e-101AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A072UYG70.0A0A072UYG7_MEDTR; MADS-box transcription factor
STRINGXP_004490359.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.13e-89AGAMOUS-like 104
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]