PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g085910.1
Common NameMTR_4g085910
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 377aa    MW: 41440.8 Da    PI: 10.1137
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g085910.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1452.4e-14302357560
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklk 60 
                      +r++r++kNRe+A rsR+RK+a++ eLe +v++L++ N++L+ +  e  ++ ++ +
  Medtr4g085910.1 302 RRQKRMIKNRESAARSRARKQAYTVELEAEVAKLKEVNEELQRKQAEFMEMQKSKE 357
                      79***************************************999888888877655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.0E-14298362IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.369300345IPR004827Basic-leucine zipper domain
PfamPF001702.5E-12302357IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.88E-10302351No hitNo description
Gene3DG3DSA:1.20.5.1701.4E-13302351No hitNo description
CDDcd147076.79E-27302356No hitNo description
PROSITE patternPS000360305320IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0000976Molecular Functiontranscription regulatory region sequence-specific DNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 377 aa     Download sequence    Send to blast
MNFAWDAMSV KTPGSVNLAS QSSIYSLTFD ELQSTIGGVG KDFGSMNMDE LLKNIWNVEE  60
TQALTSLTGG GVGEGPNNPN GGTLQKQGSL TLPRTLSQRK VDEVWRDLMK DSGSSMPQRQ  120
PTLGEVTLEE FLVRAGVVKE DTPNHAQQIE RPNNNEWFSD FSRSNNNTNL LGFQQPNGNN  180
GDMSDNNNLV PKHVPLPPSS INLNHSQRPP PLFPKPTTVA FASPMHLLNN AQLGNNGRSV  240
GPGVGTLGLS ASNITAPVAS PGSKMSPDLI TKRNLDPSLL SPVPYAINRG RKCVPVEKGV  300
ERRQKRMIKN RESAARSRAR KQAYTVELEA EVAKLKEVNE ELQRKQAEFM EMQKSKEDLV  360
RTNKIKYLRR TLTGPW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.82680.0leaf| root| stem
Functional Description ? help Back to Top
Source Description
UniProtBinds to the ABA-responsive element (ABRE). Could participate in abscisic acid-regulated gene expression.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00038PBMTransfer from AT4G34000Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g085910.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by abscisic acid (ABA) and cold. {ECO:0000269|PubMed:10636868}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1404070.0BT140407.1 Medicago truncatula clone JCVI-FLMt-21B4 unknown mRNA.
GenBankBT1476880.0BT147688.1 Medicago truncatula clone JCVI-FLMt-21J1 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607958.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 7
SwissprotQ9M7Q56e-91AI5L4_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 4
TrEMBLG7JL680.0G7JL68_MEDTR; ABA response element-binding factor
STRINGAES901550.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19623481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G45249.14e-89abscisic acid responsive elements-binding factor 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Fernando VCD,Al Khateeb W,Belmonte MF,Schroeder DF
    Role of Arabidopsis ABF1/3/4 during det1 germination in salt and osmotic stress conditions.
    Plant Mol. Biol., 2018. 97(1-2): p. 149-163
    [PMID:29680877]