PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g086220.1
Common NameMTR_4g086220
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 235aa    MW: 26215.9 Da    PI: 4.5549
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g086220.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.33e-2194144155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      ++y+GVr+++ +g+W+AeIrdp+    r +r++lg+f taeeAa+a+++a+ +++g
  Medtr4g086220.1  94 KKYRGVRQRP-WGKWAAEIRDPR----RaTRVWLGTFSTAEEAARAYDNAAIEFRG 144
                      59********.**********82....48************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008477.6E-1595144IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-2395153IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.0E-3495153IPR001471AP2/ERF domain
SMARTSM003808.4E-4095158IPR001471AP2/ERF domain
PROSITE profilePS5103225.46295152IPR001471AP2/ERF domain
PRINTSPR003672.2E-1296107IPR001471AP2/ERF domain
CDDcd000183.09E-3596152No hitNo description
PRINTSPR003672.2E-12118134IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0050832Biological Processdefense response to fungus
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MNMNYSSSSF SATTLTSDQE LSVIVSALTN VVSGSTSTEF HLPNPAIGSS SSSSLERIVP  60
PANIETCQEC NIAGCLGCDF FPEEKKQKQK RAKKKYRGVR QRPWGKWAAE IRDPRRATRV  120
WLGTFSTAEE AARAYDNAAI EFRGPRAKLN FPMVDDSLKQ SEVVAPDLEN VKDENENENE  180
NMNQEMQSET NIGFGNNMDC DFWDRLGETD FQQLMRFMDF GGDSSDSRTG NTFN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A4e-2494153161ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.232070.0root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00469DAPTransfer from AT4G34410Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g086220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1483480.0AC148348.6 Medicago truncatula clone mth2-28b4, complete sequence.
GenBankAC2255380.0AC225538.2 Medicago truncatula clone mth2-68m14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607983.11e-176ethylene-responsive transcription factor ERF109
SwissprotQ9SZ069e-40EF109_ARATH; Ethylene-responsive transcription factor ERF109
TrEMBLG7JL931e-174G7JL93_MEDTR; AP2/ERF domain transcription factor
STRINGAES901801e-175(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29623072
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G34410.17e-33redox responsive transcription factor 1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Matsuo M,Oelmüller R
    REDOX RESPONSIVE TRANSCRIPTION FACTOR1 is involved in age-dependent and systemic stress signaling.
    Plant Signal Behav, 2015. 10(11): p. e1051279
    [PMID:26479402]
  3. Bertea CM,Narayana R,Agliassa C,Rodgers CT,Maffei ME
    Geomagnetic Field (Gmf) and Plant Evolution: Investigating the Effects of Gmf Reversal on Arabidopsis thaliana Development and Gene Expression.
    J Vis Exp, 2018.
    [PMID:26649488]
  4. Bahieldin A, et al.
    Ethylene responsive transcription factor ERF109 retards PCD and improves salt tolerance in plant.
    BMC Plant Biol., 2016. 16(1): p. 216
    [PMID:27716054]
  5. Huang D,Lin W,Deng B,Ren Y,Miao Y
    Dual-Located WHIRLY1 Interacting with LHCA1 Alters Photochemical Activities of Photosystem I and Is Involved in Light Adaptation in Arabidopsis.
    Int J Mol Sci, 2018.
    [PMID:29112140]
  6. Kong X, et al.
    PHB3 Maintains Root Stem Cell Niche Identity through ROS-Responsive AP2/ERF Transcription Factors in Arabidopsis.
    Cell Rep, 2018. 22(5): p. 1350-1363
    [PMID:29386120]