PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g087300.2

Common Name

MTR_4g087300

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 143aa MW: 15599.8 Da PI: 9.1711

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g087300.2	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	15.4	3.4e-05	33	72	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R ++i +++ L++l+ + +K + +++L++A++YI L Medtr4g087300.2 33 KDRKEKIGERIVALQQLVSPY-----GKTDTSSVLKEAMDYIGFL 72 6788999*********999.....9*************887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.357	23	72	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-9	29	83	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.003	29	78	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.83E-11	30	87	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.29E-5	33	77	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009739	Biological Process	response to gibberellin
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 143 aa Download sequence Send to blast
MMGHKRSPCS VDQSNYNSIA SKKQKPDLSI STKDRKEKIG ERIVALQQLV SPYGKTDTSS 60 VLKEAMDYIG FLHKQVKLLS APYLETAPAT QLQDTESCSL RSRGLCIVPV SFTNGVAEGN 120 GADIWAPIKT TSPKHEKDVS QF*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g087300.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT092520	1e-131	BT092520.1 Soybean clone JCVI-FLGm-11K11 unknown mRNA.
GenBank	KT031098	1e-131	KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003608064.1	1e-103	transcription factor bHLH153 isoform X1
Refseq	XP_003608066.1	1e-103	transcription factor bHLH153 isoform X3
Refseq	XP_024638356.1	1e-103	transcription factor bHLH153 isoform X3
Swissprot	Q7XJU2	9e-52	BH153_ARATH; Transcription factor bHLH153
TrEMBL	G7JNL3	1e-101	G7JNL3_MEDTR; BHLH transcription factor-like protein
TrEMBL	G7JNL5	1e-101	G7JNL5_MEDTR; BHLH transcription factor-like protein
STRING	AES90261	1e-102	(Medicago truncatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	4e-54	bHLH family protein

Link Out ? help Back to Top
Phytozome	Medtr4g087300.2
Entrez Gene	11444608

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]