PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g087920.1
Common NameMTR_4g087920
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 273aa    MW: 30324.5 Da    PI: 6.6489
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g087920.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.49.7e-1277124354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      ++h e+ErrRR+riN  + +Lr l+ +     ++K++Ka+iL +++  +k+L
  Medtr4g087920.1  77 KNHREAERRRRERINGHLGTLRGLVAST----HQKMDKATILAEVISQVKEL 124
                      58*************************8....8************9988887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.60274124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-977124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-1277126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.5E-1378128IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.5E-1080130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048739.39E-4163229No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDYSFYDKIY SSEYDDLGLF NPTLNNFGAS NGDSTGRLSS PRSLVLESEK EKVVEGPVTE  60
NVGKDEVSED KGLASLKNHR EAERRRRERI NGHLGTLRGL VASTHQKMDK ATILAEVISQ  120
VKELKKNAME ASKGFLIPTE VDEVKVEPYD IKLGYGCMSY IATICCDYQP EILCDLKKAI  180
DALQLQLVKA EMSTLESRMK NMFVFTCCKG NSFNVEACQS IANVVHKALD SVLEKASNSM  240
EFSLKTSYPN KRRRMCFVET STSSCSHASC SC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18287ERRRRE
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g087920.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608130.20.0putative transcription factor bHLH107
TrEMBLG7JPQ20.0G7JPQ2_MEDTR; Helix loop helix DNA-binding domain protein
STRINGXP_004505138.11e-145(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56770.18e-26bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]