PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g088065.1
Common NameMTR_4g088065
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WOX
Protein Properties Length: 250aa    MW: 27781.2 Da    PI: 10.2298
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g088065.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox18.82.9e-061461832457
                      S--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
         Homeobox  24 ypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                       p +++ +++ ++l    ++   +V++WFqNr  + k+
  Medtr4g088065.1 146 EPAENKVKKIHEQLqgfgQVGAVNVSYWFQNRNSRSKQ 183
                      6889999999999999999*************777775 PP
2Wus_type_Homeobox47.83.5e-161451852565
  Wus_type_Homeobox  25 rtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        + P+++++++i ++L+ +G+++  NV yWFQNr +R++qk+
    Medtr4g088065.1 145 VEPAENKVKKIHEQLQGFGQVGAVNVSYWFQNRNSRSKQKK 185
                        679************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-4149188IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MVWRQFLNRL PTKYNLSLRG VRLNSSLYCV GGCGRLETVN HILFNRAVLW SIWSESLKWL  60
GVLAVFVEGG FERLILFKGL VAGGKTVCER LGVILVSIIS SIWNARNAKE ASGSGVGLIS  120
CKECGILNVD LDWRICQICF GLIDVEPAEN KVKKIHEQLQ GFGQVGAVNV SYWFQNRNSR  180
SKQKKRILYN KKLKTQQNST PCNSLPQILT PPPNSFSSDH QKASIGFSNI NDVCEPKPPR  240
SQGNTTKSI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g088065.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636460.11e-160WUSCHEL-related homeobox 9
TrEMBLA0A072UYM10.0A0A072UYM1_MEDTR; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33880.11e-12homeobox-3
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]