PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g088375.1
Common NameMTR_4g088375
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family HB-other
Protein Properties Length: 1718aa    MW: 193314 Da    PI: 5.1391
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g088375.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.93.6e-183388257
                     T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
         Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                      kR+  t+ qle+Le++++ ++yps+  r +L++klgLt+rq ++WF+ rR k+kk
  Medtr4g088375.1 33 PKRQMKTPFQLETLEKAYALDNYPSEPVRIDLSEKLGLTDRQLQMWFCHRRLKDKK 88
                     69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.1E-17689IPR009057Homeodomain-like
SuperFamilySSF466891.03E-162489IPR009057Homeodomain-like
PROSITE profilePS5007116.6172989IPR001356Homeobox domain
SMARTSM003899.2E-193193IPR001356Homeobox domain
PfamPF000469.1E-163388IPR001356Homeobox domain
CDDcd000862.47E-143490No hitNo description
PROSITE profilePS5082716.873516575IPR018501DDT domain
SMARTSM005713.5E-22516575IPR018501DDT domain
PfamPF027912.6E-17518572IPR018501DDT domain
PfamPF050661.4E-14698766IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156121.8E-8898942IPR028942WHIM1 domain
PfamPF156132.8E-1410771149IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1718 aa     Download sequence    Send to blast
MEGEGSSEGE SDRKRGGADD GKIAVSTEGQ SKPKRQMKTP FQLETLEKAY ALDNYPSEPV  60
RIDLSEKLGL TDRQLQMWFC HRRLKDKKES APKKVVPPRK PVVQPLPDSP VDDHRMGFEH  120
GNEYDSGSGS GSSPGLEPRN AMALSVGYYE SPHDEMELKA IACVEDQLGE PLREDAPIIG  180
VEFDPLPPDA FGALIVTERQ KRPRLAYDGK IYGRHDVKTD KAKARTFHEY LPSKSGIRSD  240
AFGQFSQSHV HVPMQGPSKT PPIVPRNHAA QGHSSRVPIL SQQGKQGSPY QSPPRELATN  300
IVSAGMNSHL IEPENPYASP SGQILQNNAM HIERKRKGDD AKITRDVEGH ELEKHDSTRR  360
KNEERVRKEM ERQDRERRKE EERLMRERQR EEERSKREEK REIERREKYL LKENIKAERI  420
RQKEELRKEK EEERRKAALE KATARKIAKE SLELIEDEQL EMMELAASSK GLSSIIRLDF  480
DTLQNIESFR DSLCLFPPES VKLRKPFAIQ PWINSEDNVG NLLMVWRFLI TFADVLELWP  540
FTLDEFVQAF HDYDSRLLGE IHVALLKVII KDIEDVARTP CTGLGMNQNG AANSGGGHPE  600
IVEGAYAWGF DIRNWHKHLN QLTWPEIFRQ LALSAGYGPQ FKKRSITSSR ANSKDEGRSS  660
EDIISTLRNG SAAQNALTKM QERGLLGPRR SRHRLTPGTV KFAAYHVLSL EDGKGLNVIE  720
LAEKIQKSGL RDLSTSKTPE ASISVALTRD AKLFERVAPS TYCVRAAFRK DPADAESILS  780
EARKKIQIFE NGFLAEEDAE DVEREESESE VDEDPEVDDL VNPSTVNKTS EPCNDFSSSG  840
KENLGHDGEL KDGFDKDLPG FPDNGSKNAD CPSGQPVACE SLIARNLGED NIEVDESKSG  900
ESWIQGLTEG EYSDLSVEER LNALVVLVGL ANEGNLIRVV LEDRLEAANA LKKQMLAEAQ  960
IDKIRLKDDN VNKSDFPSIN GIRVETPITC AAAEGNQSPL LDINICNNNN EESPSKAENK  1020
RLAVVGQSLS EKLPSVQDLC IGPDNPQTPL SAQYSKRSRS QLKSFISHLA EEMYIYRSLP  1080
LGQDRRHNRY WQFVASASCN DPGSGRIFVE YHDGKWRLID SEEAFDALLN SLDSRGIRES  1140
HLRLMLLKIE NIFKENVQKN AKCAKIGNTD EICVKNEAEE TDSSPDHHTR SDSPSSTLCG  1200
LSSDTSETSA SFTIELGKSE SDKKASLRRY QDFQKWMWKE CYNPSILCAM KYGKKRCKPQ  1260
VDICDICLNL YCLEDSHCSY CHLTFPSNDG FDFSKHVIQC GDKSSKDISI FESPLPLRTR  1320
LLKALLAFIE VSVPPEAFQS VWTEDIRRLW GVKLSRSSSA EELLQMLTLF ERALKRDFLS  1380
SPFSTTGDLL GMNAMSESAA HTSMDLESVT VLPWVPRTTS AVSLRLFELD TSITYLQLEK  1440
PEPCEEKEAR FIKLPSRYAS VKSTKVVEPV DLDHDEFMKV KSAPLKIVQS SKKRRRLNQD  1500
KGRDKKLSKR TSHSKRDNGH HNFEVTENLS QRIKQQGQGS QGQTGGRGPR TIRKRREEKR  1560
AVEDLSLGHK AANNSSNIGR EQSRILDEDW DDEKASPMRP IQMEAADMSS SSEEIEYDDN  1620
AQAVESDDNV EAVEYGQGNW EIGFNGTPNR WNRDLVGMSE EEDVEASEDD NDNGIEGNEE  1680
EEEGSEADVM SQGSDRMANR VVKEESLDSS DSEDSFD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18188RRLKDKKE
214921496KRRRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.90470.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g088375.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013456957.10.0homeobox-DDT domain protein RLT1 isoform X2
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A072UPN40.0A0A072UPN4_MEDTR; Homeobox domain protein
STRINGGLYMA07G32180.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]