PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g088850.1
Common NameMTR_4g088850
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LSD
Protein Properties Length: 134aa    MW: 14412.7 Da    PI: 8.5707
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g088850.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.75.1e-154569125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     Cg+Cr lLsYP+GA++V+C++C+tV
  Medtr4g088850.1 45 CGSCRRLLSYPPGAKHVKCSCCQTV 69
                     ************************9 PP
2zf-LSD143.64.7e-1483107125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+C +lL+YP+GAp VRC++C +V
  Medtr4g088850.1  83 CGSCAVLLMYPYGAPQVRCSSCRFV 107
                      **********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.0E-184272IPR005735Zinc finger, LSD1-type
PfamPF069432.3E-124569IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010535.9E-1180108IPR005735Zinc finger, LSD1-type
PfamPF069433.8E-1183107IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MMQSQHQVNK EDDDGPPPGW QPIPPPQRPR PPPPSLPSGF AQMVCGSCRR LLSYPPGAKH  60
VKCSCCQTVN IVLEADQVGQ VKCGSCAVLL MYPYGAPQVR CSSCRFVTEI GADNKRPPWS  120
VQQSKPTPPK AGC*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g088850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457042.12e-92protein LOL2 isoform X2
SwissprotO654267e-45LOL2_ARATH; Protein LOL2
TrEMBLA0A072UPT84e-91A0A072UPT8_MEDTR; LSD1-type zinc finger protein
STRINGGLYMA07G31600.16e-67(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.13e-43lsd one like 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]