PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g088850.2
Common NameMTR_4g088850
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family LSD
Protein Properties Length: 150aa    MW: 16119.8 Da    PI: 8.4884
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g088850.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD146.56.1e-154569125
          zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                     Cg+Cr lLsYP+GA++V+C++C+tV
  Medtr4g088850.2 45 CGSCRRLLSYPPGAKHVKCSCCQTV 69
                     ************************9 PP
2zf-LSD143.45.7e-1483107125
          zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                      Cg+C +lL+YP+GAp VRC++C +V
  Medtr4g088850.2  83 CGSCAVLLMYPYGAPQVRCSSCRFV 107
                      **********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010531.3E-184272IPR005735Zinc finger, LSD1-type
PfamPF069432.8E-124569IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010537.1E-1180108IPR005735Zinc finger, LSD1-type
PfamPF069434.5E-1183107IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009617Biological Processresponse to bacterium
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MMQSQHQVNK EDDDGPPPGW QPIPPPQRPR PPPPSLPSGF AQMVCGSCRR LLSYPPGAKH  60
VKCSCCQTVN IVLEADQVGQ VKCGSCAVLL MYPYGAPQVR CSSCRFVTEI GTTSGLHGLY  120
NKVNQLLPKL VVSDLSIVLL TGSSLYNKL*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g088850.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457043.11e-105protein LOL2 isoform X1
SwissprotO654268e-37LOL2_ARATH; Protein LOL2
TrEMBLA0A072UMQ71e-104A0A072UMQ7_MEDTR; LSD1-type zinc finger protein
STRINGGLYMA07G31600.11e-52(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF130263132
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21610.14e-35lsd one like 2
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]