PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g089135.1
Common NameMTR_4g089135
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 345aa    MW: 38660.7 Da    PI: 7.7671
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g089135.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM173.65.9e-54151421128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                      lppGfrFhPtdeelvv+yLk+k+++ +l++  +i+e+d+yk++Pw+Lp+k++ +e+ewyfFs+rd+ky++g r+nra++sgyWkatg+dk++l+
  Medtr4g089135.1  15 LPPGFRFHPTDEELVVHYLKRKAASAPLPV-AIIAEIDLYKFDPWELPSKASFGEQEWYFFSPRDRKYPNGARPNRAATSGYWKATGTDKPILT 107
                      79****************************.88***************988899***************************************9 PP

              NAM  95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      + ++++vg+kk Lvfy g+ pkg+kt+W+mheyrl
  Medtr4g089135.1 108 SdGNQKVGVKKALVFYGGKPPKGVKTNWIMHEYRL 142
                      967788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.57E-6410188IPR003441NAC domain
PROSITE profilePS5100561.52915188IPR003441NAC domain
PfamPF023652.1E-2816142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MDSTDSSSCS PHPHLPPGFR FHPTDEELVV HYLKRKAASA PLPVAIIAEI DLYKFDPWEL  60
PSKASFGEQE WYFFSPRDRK YPNGARPNRA ATSGYWKATG TDKPILTSDG NQKVGVKKAL  120
VFYGGKPPKG VKTNWIMHEY RLITDHNNHH SYNATSKTPP LPSDHPPNNN KKNSLRLDDW  180
VLCRIYKKSN SSNMPRPLLM DQYDDQTYNM QQNSKHSSSR STSYGLENDD NFFDGILASD  240
HGMQNGCDIN SKGDNNNNES LFPMKRALNA SSQFWNETGS PGSSSSSKRF HGDLNSGISS  300
NAEENNSFVS LLSQLPPSTT FHQNSILGDG VMRQQFQLPD INWN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A2e-741519317170NO APICAL MERISTEM PROTEIN
1ut4_B2e-741519317170NO APICAL MERISTEM PROTEIN
1ut7_A2e-741519317170NO APICAL MERISTEM PROTEIN
1ut7_B2e-741519317170NO APICAL MERISTEM PROTEIN
3swm_A2e-741519320173NAC domain-containing protein 19
3swm_B2e-741519320173NAC domain-containing protein 19
3swm_C2e-741519320173NAC domain-containing protein 19
3swm_D2e-741519320173NAC domain-containing protein 19
3swp_A2e-741519320173NAC domain-containing protein 19
3swp_B2e-741519320173NAC domain-containing protein 19
3swp_C2e-741519320173NAC domain-containing protein 19
3swp_D2e-741519320173NAC domain-containing protein 19
4dul_A2e-741519317170NAC domain-containing protein 19
4dul_B2e-741519317170NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}.
UniprotTISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00058PBMTransfer from AT1G61110Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g089135.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457094.10.0NAC transcription factor 25
SwissprotQ8GY421e-110NAC25_ARATH; NAC transcription factor 25
TrEMBLA0A072UZ300.0A0A072UZ30_MEDTR; NAC transcription factor-like protein
STRINGXP_004505006.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16233498
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G61110.11e-105NAC domain containing protein 25
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]