PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g091910.1
Common NameMTR_4g091910
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 211aa    MW: 24310 Da    PI: 8.9775
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g091910.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.22.9e-085093755
                     HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                     e Er+RR+++ s++  Lr+l+P       + ++Ka+i e A+ Y  +Lq
  Medtr4g091910.1 50 ETERKRREKLTSRLLVLRSLVPII-----TNMNKASIIEDAITYTMKLQ 93
                     78*********************6.....58*************88887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.974392IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.76E-1346107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.6E-94998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-64993IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.84E-85097No hitNo description
Gene3DG3DSA:4.10.280.103.4E-1150111IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048658Biological Processanther wall tapetum development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 211 aa     Download sequence    Send to blast
MEQVNNNRLC VSMEELGFNA ENGSNRGNWR KNKHRDNDGV PKVFTSKNLE TERKRREKLT  60
SRLLVLRSLV PIITNMNKAS IIEDAITYTM KLQHEVESLT LELDGMEPRR EKRAEPKQRE  120
FSSVDEMNKM GLQEEVQVAK VDGNKLWIKL LIEKKRGRFN KLIQDLNDLN IEMVDLSVTT  180
MAGAYLITAS LQDMSGEPLE LYRIPTIIKY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15156ERKRRE
25257RKRREK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00091SELEXTransfer from AT4G21330Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g091910.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457137.11e-153transcription factor DYT1
TrEMBLA0A072UQ231e-152A0A072UQ23_MEDTR; Helix loop helix DNA-binding domain protein
STRINGXP_004504967.14e-75(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.16e-33bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]