PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g091990.1
Common NameMTR_4g091990
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 200aa    MW: 23150 Da    PI: 10.0401
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g091990.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH216e-074990854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                      Er+R +r+N++++ L +l+P       + ++K +i   A+ YIk+L
  Medtr4g091990.1 49 SERKRKQRLNTKLFMLWSLVPMV-----TNMTKESIFNDAITYIKKL 90
                     5*********************8.....68***************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.4264190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-1246106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.6E-64796IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.12E-64995No hitNo description
Gene3DG3DSA:4.10.280.102.9E-1149107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-44990IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 200 aa     Download sequence    Send to blast
MEQEHDIRLS LSLEDLGFNA ENDSNKRKSS KKYYNEDGTK VFLSKNAGSE RKRKQRLNTK  60
LFMLWSLVPM VTNMTKESIF NDAITYIKKL KDEVKSLTQE LQAMEPKEKF KERAEPKIEV  120
QVEKMDGNKL WVKMIFENKR GGFKKLMETM NDLGLEMIEA NVTTIKGAYL ITTFIKGMGG  180
QRLDVHQVKH LLQDIIKII*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g091990.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024636481.11e-141transcription factor DYT1
TrEMBLA0A072UQ301e-142A0A072UQ30_MEDTR; Helix loop helix DNA-binding domain protein
STRINGXP_004504967.12e-60(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.12e-30bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]