PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g094302.2

Common Name

MTR_4g094302

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NAC

Protein Properties

Length: 160aa MW: 18583.9 Da PI: 9.2586

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g094302.2	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	120.7	1.3e-37	11	130	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrF Ptdeelvv++L++k++ +++ +vi+++d+y ++Pw+L+ ++ +e ++wy++s+r +nr+t++gyW g +++v++ Medtr4g094302.2 11 LPPGFRFYPTDEELVVHFLHRKASLLPCHP-DVIPDLDLYPFDPWQLQGRALEEGNQWYYYSRRT--------QNRMTNNGYWMPMGMEEQVVT 95 79***********************999.99***********77778899**984........589********999998 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +++ vg+kk vf+ g+ap+g++t+W+m+eyrl Medtr4g094302.2 96 SsSNKRVGMKKYYVFHIGEAPNGNQTNWIMQEYRL 130 757788*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-46	7	137	IPR003441	NAC domain
PROSITE profile	PS51005	41.76	11	159	IPR003441	NAC domain
Pfam	PF02365	1.1E-22	12	130	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010089	Biological Process	xylem development
GO:0043067	Biological Process	regulation of programmed cell death
GO:0048367	Biological Process	shoot system development
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 160 aa Download sequence Send to blast
MVDNNNNNVN LPPGFRFYPT DEELVVHFLH RKASLLPCHP DVIPDLDLYP FDPWQLQGRA 60 LEEGNQWYYY SRRTQNRMTN NGYWMPMGME EQVVTSSSNK RVGMKKYYVF HIGEAPNGNQ 120 TNWIMQEYRL SDSASSSTRS SSKRKSQPKS VSIFLILRV*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-37	7	130	13	142	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-37	7	130	13	142	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-37	7	130	13	142	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-37	7	130	13	142	NO APICAL MERISTEM PROTEIN
3swm_A	1e-37	7	130	16	145	NAC domain-containing protein 19
3swm_B	1e-37	7	130	16	145	NAC domain-containing protein 19
3swm_C	1e-37	7	130	16	145	NAC domain-containing protein 19
3swm_D	1e-37	7	130	16	145	NAC domain-containing protein 19
3swp_A	1e-37	7	130	16	145	NAC domain-containing protein 19
3swp_B	1e-37	7	130	16	145	NAC domain-containing protein 19
3swp_C	1e-37	7	130	16	145	NAC domain-containing protein 19
3swp_D	1e-37	7	130	16	145	NAC domain-containing protein 19
4dul_A	1e-37	7	130	13	142	NAC domain-containing protein 19
4dul_B	1e-37	7	130	13	142	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.14900	0.0	leaf\| root

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269\|PubMed:15923329, ECO:0000269\|PubMed:18069942}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269\|PubMed:18069942, ECO:0000269\|PubMed:20458494}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g094302.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013457220.1	1e-111	NAC domain-containing protein 104
Swissprot	Q8GWK6	1e-63	NC104_ARATH; NAC domain-containing protein 104
TrEMBL	A0A072UZF9	1e-116	A0A072UZF9_MEDTR; NAC transcription factor-like protein
STRING	XP_004504766.1	2e-83	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G64530.1	2e-62	xylem NAC domain 1

Link Out ? help Back to Top
Phytozome	Medtr4g094302.2
Entrez Gene	25493296

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Zhao C, et al. XYLEM NAC DOMAIN1, an angiosperm NAC transcription factor, inhibits xylem differentiation through conserved motifs that interact with RETINOBLASTOMA-RELATED. New Phytol., 2017. 216(1): p. 76-89 [PMID:28742236] Tang N, et al. Natural variation at XND1 impacts root hydraulics and trade-off for stress responses in Arabidopsis. Nat Commun, 2018. 9(1): p. 3884 [PMID:30250259]