PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g094390.1
Common NameMTR_4g094390
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 196aa    MW: 22031.3 Da    PI: 6.316
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g094390.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.22.3e-15128181255
                      XXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   2 kelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkke 55 
                      ++l++++r++kNRe+A rsR+RK+a++ eLe  vk Le eNk+L +e  e kk+
  Medtr4g094390.1 128 AALQKQKRMIKNRESAARSRERKQAYTTELESLVKHLEIENKQLEEEQAERKKL 181
                      689******************************************998777765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PRINTSPR000415.2E-5126142IPR001630cAMP response element binding (CREB) protein
SMARTSM003381.2E-8127189IPR004827Basic-leucine zipper domain
PfamPF001705.1E-14128181IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.415129180IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.63E-10131180No hitNo description
CDDcd147076.99E-19131177No hitNo description
Gene3DG3DSA:1.20.5.1705.4E-13132179No hitNo description
PROSITE patternPS000360134149IPR004827Basic-leucine zipper domain
PRINTSPR000415.2E-5144164IPR001630cAMP response element binding (CREB) protein
PRINTSPR000415.2E-5164181IPR001630cAMP response element binding (CREB) protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MDEILKNIFP AAIEAAKQQH QEHQQEEQQS NNNNNIDDVW TDIVADGGAN HLHHQQHYHH  60
PSSDEGFSAC GAGGGDEVTL EDFLVKAGAV PYPHHQYPSS SSAVDDGSHS LQVALGKRKT  120
VDETLDKAAL QKQKRMIKNR ESAARSRERK QAYTTELESL VKHLEIENKQ LEEEQAERKK  180
LRFKQVCISP HFFTT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g094390.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457259.21e-136G-box-binding factor 4
TrEMBLA0A072UZK71e-144A0A072UZK7_MEDTR; BZIP transcription factor
STRINGXP_004504929.14e-38(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20283481
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03970.14e-20G-box binding factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]