PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g094412.1
Common NameMTR_4g094412
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 479aa    MW: 53636.9 Da    PI: 5.0688
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g094412.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.73.2e-30233292159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++tYeg+Hnh+
  Medtr4g094412.1 233 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApGCPVRKQVQRCIDDMSILITTYEGTHNHP 292
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-32218294IPR003657WRKY domain
SuperFamilySSF1182907.59E-28226294IPR003657WRKY domain
PROSITE profilePS5081129.207228294IPR003657WRKY domain
SMARTSM007742.7E-37233293IPR003657WRKY domain
PfamPF031062.5E-27234292IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 479 aa     Download sequence    Send to blast
MEIDLSLKID SDDEQEEEVD RELVKEDDEK EEVHEATAGE IEDDDASVIQ LSLQDDTKIK  60
QLSALEMEME SMKEENKALR KVVEQTMKDY YDLQTKFSVI QENNNNKRKD RQLSLSLQDN  120
NAATSGEGPS RSFHEIFSQK IQRTSSPLPP NNISEDDSIS ESDLGLSLRM QTISTCQRDT  180
EGKKEQLGSF ESVQNKMQRV HEVPSVTTTH AAYSPPNRKA RVSVRARCET ATMNDGCQWR  240
KYGQKIAKGN PCPRAYYRCT VAPGCPVRKQ VQRCIDDMSI LITTYEGTHN HPLPVGATAM  300
ASTASAAASF MLLDSSNPNI SDYGFTTQQS FNPYTNNSFH HPLNQSPNIR SINPNDPSQG  360
IVFDLTNNNN NELNEQRRFS TAGSSSSNIS TDQPRFSWMQ NKYQQQSNTS NANITMNNFH  420
NPRVMDIHDR VWKGSEENNN NNVSAIASDP KFRLAVAAAI SSLMNKESNN TTTHGSNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-22220296176WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g094412.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968481e-109BT096848.1 Soybean clone JCVI-FLGm-15D10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457266.20.0probable WRKY transcription factor 9
TrEMBLA0A072UNM80.0A0A072UNM8_MEDTR; WRKY family transcription factor
TrEMBLA0A072UQH00.0A0A072UQH0_MEDTR; Putative transcription factor WRKY family
STRINGXP_004504738.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.17e-67WRKY DNA-binding protein 9
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]