PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g094758.1

Common Name

MTR_126s0012

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 484aa MW: 53992.8 Da PI: 5.7593

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g094758.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.5	6.7e-10	289	335	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + h E++RR++++ ++ Lr+l+P++ +K + a+++ A+eY+++L Medtr4g094758.1 289 TEHLTTEKQRREQLKGRYKILRSLIPNS-----TKDDRASVVGDAIEYLREL 335 568889*******************9.....9*************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	2.75E-13	284	356	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	13.7	286	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.4E-9	289	339	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.2E-7	290	335	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	5.02E-9	291	335	No hit	No description
SMART	SM00353	1.2E-7	292	341	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 484 aa Download sequence Send to blast
MSSGSGDNQN MHEQTGCFDP DTMAEGVENS PEDNNSPQTM PNQVVAGNSN NSIEENFRPS 60 VEEFSYHNHH SPQHLEDVST YTNGFTPSSE NIAQQNLGLN IGNYYYNNMD NLLEQEVYQN 120 SSWDPSAQDM DYANHQEYHQ LHNHKQSYNP STTQAPHYPS PDVLNLHFPR SSASSLLTNP 180 STICITNPTQ KPPNFHYSMS FLGDLPIGSD NSSGSSVLYD PLFPLNLPAQ SPALRELPQS 240 LPRVYSMPTN SRNGSPFGGG DEMEGDGGMG VSQFNKVTAF VGKGKGKATE HLTTEKQRRE 300 QLKGRYKILR SLIPNSTKDD RASVVGDAIE YLRELIRTVN ELKLLVEKKR HEIEICKRHK 360 TEDYAAESCH MKPFGDPDGS IRTSWLQRKS KDSEVDVRII DDDVTIKLFQ RKKVNCLLFV 420 SKVLDELQLE LNHVAGGHVG EYCSFLFNSK VIEGSSVHAS AIANRVIDVL DTQYAAVVPH 480 NRM*

Sequence ? help Back to Top

Protein Sequence Length: 484 aa Download sequence Send to blast

MSSGSGDNQN MHEQTGCFDP DTMAEGVENS PEDNNSPQTM PNQVVAGNSN NSIEENFRPS  60
VEEFSYHNHH SPQHLEDVST YTNGFTPSSE NIAQQNLGLN IGNYYYNNMD NLLEQEVYQN  120
SSWDPSAQDM DYANHQEYHQ LHNHKQSYNP STTQAPHYPS PDVLNLHFPR SSASSLLTNP  180
STICITNPTQ KPPNFHYSMS FLGDLPIGSD NSSGSSVLYD PLFPLNLPAQ SPALRELPQS  240
LPRVYSMPTN SRNGSPFGGG DEMEGDGGMG VSQFNKVTAF VGKGKGKATE HLTTEKQRRE  300
QLKGRYKILR SLIPNSTKDD RASVVGDAIE YLRELIRTVN ELKLLVEKKR HEIEICKRHK  360
TEDYAAESCH MKPFGDPDGS IRTSWLQRKS KDSEVDVRII DDDVTIKLFQ RKKVNCLLFV  420
SKVLDELQLE LNHVAGGHVG EYCSFLFNSK VIEGSSVHAS AIANRVIDVL DTQYAAVVPH  480
NRM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g094758.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013457399.1	0.0	transcription factor bHLH91
TrEMBL	A0A396IDL8	0.0	A0A396IDL8_MEDTR; Putative transcription factor bHLH family
STRING	AES85441	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3743	32	62

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	4e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	Medtr4g094758.1