PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g095600.1

Common Name

MTR_4g095600

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

LBD

Protein Properties

Length: 234aa MW: 25403 Da PI: 7.6662

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g095600.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	99.8	2.6e-31	2	103	1	97
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +C++C+vlr++C+++C+l+p++ p++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg++++++++++q Medtr4g095600.1 2 SCNGCRVLRKGCSESCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCQ 95 6******************************************************************************************* PP DUF260 90 lkaelall 97 +++e++l+ Medtr4g095600.1 96 AAVETVLR 103 998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.892	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	1.4E-26	2	101	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 234 aa Download sequence Send to blast
MSCNGCRVLR KGCSESCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISNVPEPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGTLRPL PELTLLDAPL 120 TATDEASEAE DGGADAMWKI REPNFGLASS RSSNKVCSGS KRRRSEEFVK VPAAINLDLR 180 LTPIFQQKAV EERRHGSPSM TSEESVTTTA CLETGIGDRW SHGGDRKVLN LFI*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.7964	0.0	glandular trichome\| leaf\| root\| seed\| stem

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in young shoots, roots, stems, leaves and flowers. {ECO:0000269\|PubMed:12068116}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g095600.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC137703	0.0	AC137703.43 Medicago truncatula chromosome 8 clone mth2-11d24, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003608484.1	1e-172	LOB domain-containing protein 38
Swissprot	Q9SN23	1e-82	LBD38_ARATH; LOB domain-containing protein 38
TrEMBL	G7JDY0	1e-171	G7JDY0_MEDTR; Lateral organ boundaries (LOB) domain protein
STRING	AES90681	1e-171	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G49940.1	8e-77	LOB domain-containing protein 38

Link Out ? help Back to Top
Phytozome	Medtr4g095600.1
Entrez Gene	11407764

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]