PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g097440.1
Common NameMTR_4g097440
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bZIP
Protein Properties Length: 175aa    MW: 20679.2 Da    PI: 10.3052
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g097440.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1301.1e-0975120550
                      CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                      ++ rr+++NRe+ArrsR RK+  +e+L++   +   eN+++k++l+
  Medtr4g097440.1  75 RKRRRMISNRESARRSRMRKQRHVENLRNQLNKCRMENREMKNRLQ 120
                      5789**************************************8875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.4E-1071135IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.17473136IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.3E-873137No hitNo description
PfamPF077166.6E-573120IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.37E-975122No hitNo description
CDDcd147022.92E-1676123No hitNo description
PROSITE patternPS0003607893IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MLSTLPPSDP LLDNPFSAFH GGFPQWDFHD LFSDDIKPTS PKTITSSSGS DEPNQPHDKR  60
KPDSDEPNHG VVDERKRRRM ISNRESARRS RMRKQRHVEN LRNQLNKCRM ENREMKNRLQ  120
FILFHLNRIR TENEWLRSER TVLNQRINNF TQILVCQQFQ PFSTAWTCNT TMVE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15878KRKPDSDEPNHGVVDERKRRR
27478RKRRR
38794RRSRMRKQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g097440.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608557.11e-127basic leucine zipper 4
TrEMBLG7JF851e-126G7JF85_MEDTR; BZIP transcription factor
STRINGAES907541e-126(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF54353254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.22e-25basic leucine-zipper 6
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]