PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g097920.2
Common NameMTR_4g097920
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 314aa    MW: 35699.2 Da    PI: 7.7075
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g097920.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.13.1e-13139185354
                      HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      + h ++ErrRR+++ ++f  L +llP +     kK++Ka+iLe A++++k+L
  Medtr4g097920.2 139 QDHVMAERRRREKLSQRFISLSSLLPGL-----KKMDKATILEDAIKHLKQL 185
                      6799************************.....9*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.948136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.5E-11139185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.8E-16140198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.35E-12141190No hitNo description
SuperFamilySSF474598.64E-16141204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.8E-14142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MEDTTLFSDH EYQMDSYAFQ FDDMAYFKSF SESPQESTYS SHTNINNKRI HSESTQNSSF  60
PTQSPDQSVA SATPPTKLLK ASPKIISFDY SNNDSKVKKP KTEIGYGENL NFGSVISQGD  120
YYKRENKVSA VNRNPIQAQD HVMAERRRRE KLSQRFISLS SLLPGLKKMD KATILEDAIK  180
HLKQLNERVK TLEEHVADKK VESAVFMKRS ILFEEDDRSS CDENSDQSLS KIEARVSGKD  240
MLIRIHGDKH CGRTATAILN ELEKHHLSVQ SSSILPFGNN YLDITIVAQM NKEYCLTMKD  300
LIRSISQVLR QLI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149ERRRRE
2145150RRRREK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.120160.0root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g097920.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1418620.0AC141862.54 Medicago truncatula chromosome 8 clone mth2-33n1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608591.10.0transcription factor bHLH19
TrEMBLA0A072UNY00.0A0A072UNY0_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
TrEMBLG7JGD50.0G7JGD5_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES907880.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22760.12e-52bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]