PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g097950.1
Common NameMTR_4g097950
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 253aa    MW: 28031.2 Da    PI: 9.9771
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g097950.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.91.3e-1171115554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h ++Er RR++i + f  L  l+P++     kK++Ka++L  A++Y+k+L
  Medtr4g097950.1  71 HIIAERIRREKISQLFIALSALIPNL-----KKMDKASVLGDAIKYVKEL 115
                      899***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.966115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.2E-971115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.15E-1671129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1671129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.23E-1171120No hitNo description
SMARTSM003539.4E-1472121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 253 aa     Download sequence    Send to blast
MKTEHLSQKT ASYVFSFENE NPPPRKVEPA LKPKTKVVNS KNGPRRVKNN ESNKKNGSFS  60
KSTTTHHTPD HIIAERIRRE KISQLFIALS ALIPNLKKMD KASVLGDAIK YVKELKEQVK  120
MLEEQSKSVE PVVVVKKLSE LSSDEDVSDT SSNSCNGNSD ETSKTNLSLP EVEASLSGKN  180
VLIRILCEKD KAVMVNVYRE IEKLHLLVIN ASSFSFGSSA LAITIIAQME NELNMSIQQL  240
AKKLRVGLVQ LN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A4e-1470119857Transcription factor MYC2
5gnj_B4e-1470119857Transcription factor MYC2
5gnj_E4e-1470119857Transcription factor MYC2
5gnj_F4e-1470119857Transcription factor MYC2
5gnj_G4e-1470119857Transcription factor MYC2
5gnj_I4e-1470119857Transcription factor MYC2
5gnj_M4e-1470119857Transcription factor MYC2
5gnj_N4e-1470119857Transcription factor MYC2
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.87630.0root| seed
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g097950.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1418620.0AC141862.54 Medicago truncatula chromosome 8 clone mth2-33n1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024638889.10.0transcription factor bHLH18
TrEMBLA0A396IFU21e-180A0A396IFU2_MEDTR; Putative transcription factor bHLH family
TrEMBLG7JGD70.0G7JGD7_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES907900.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-42bHLH family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]