PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g098630.1
Common NameMTR_4g098630
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family NAC
Protein Properties Length: 319aa    MW: 36214.4 Da    PI: 5.4548
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g098630.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM160.18.5e-5061361128
              NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                      lppGfrFhPtdeelv +yLk+kveg ++el +vi+++d yk++Pw+Lp k  + +++ ew+f+++rd ky++g+r+nratk+gyWkatgk++++
  Medtr4g098630.1   6 LPPGFRFHPTDEELVGYYLKRKVEGLEIEL-DVIPTIDFYKFDPWELPeKsFLPKRDLEWFFYCTRDLKYPNGSRTNRATKAGYWKATGKERKI 98 
                      79****************************.9***************95334445667************************************ PP

              NAM  93 lsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                      +++  +++ +g  ktLvfy grap g +t+W+mheyrl
  Medtr4g098630.1  99 VCRcsSSTITGNCKTLVFYLGRAPLGDRTNWIMHEYRL 136
                      **97777779**************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.26E-584159IPR003441NAC domain
PROSITE profilePS5100555.1746159IPR003441NAC domain
PfamPF023653.1E-277136IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0008283Biological Processcell proliferation
GO:0071365Biological Processcellular response to auxin stimulus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MEGASLPPGF RFHPTDEELV GYYLKRKVEG LEIELDVIPT IDFYKFDPWE LPEKSFLPKR  60
DLEWFFYCTR DLKYPNGSRT NRATKAGYWK ATGKERKIVC RCSSSTITGN CKTLVFYLGR  120
APLGDRTNWI MHEYRLTDDL SQDSPYFKGG LALCRVIKKN EKSKRVATSS INGSETSMRF  180
SSDVSSQASH LNNGSQNVAT IAEFNHVSIE TNPSTFWISP DMILDSSKEY TKVQDALFEY  240
FPPSCESPRQ SLEHITTSPT LSYSNLNGEN EFSDNVSQNG CMSPYSSALG NFMNYNGNWD  300
VPYEVYNQIN SVSYPEPF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-47516516171NO APICAL MERISTEM PROTEIN
1ut4_B1e-47516516171NO APICAL MERISTEM PROTEIN
1ut7_A1e-47516516171NO APICAL MERISTEM PROTEIN
1ut7_B1e-47516516171NO APICAL MERISTEM PROTEIN
4dul_A1e-47516516171NAC domain-containing protein 19
4dul_B1e-47516516171NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in tissue reunion of wounded inflorescence stems. Required for the division of pith cells in the reunion process, which is dependent on polar-transported auxin and the wound-inducible hormones ethylene and jasmonate (PubMed:21911380). Binds to the promoters of XTH19 and XTH20 to induce their expression via auxin signaling. XTH19 and XTH20 are involved in cell proliferation in the tissue reunion process of incised stems (PubMed:25182467). Involved in hypocotyl graft union formation. Required for the auxin- mediated promotion of vascular tissue proliferation during hypocotyl graft attachment (PubMed:27986917). {ECO:0000269|PubMed:21911380, ECO:0000269|PubMed:25182467, ECO:0000269|PubMed:27986917}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00439DAPTransfer from AT4G17980Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g098630.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding in the flowering stem. {ECO:0000269|PubMed:21911380}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1743611e-160AC174361.12 Medicago truncatula chromosome 8 clone mth2-39o9, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003608633.10.0NAC domain-containing protein 71
SwissprotO496973e-98NAC71_ARATH; NAC domain-containing protein 71
TrEMBLG7JGH70.0G7JGH7_MEDTR; NAC transcription factor-like protein
STRINGAES908300.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67223450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.11e-100NAC domain containing protein 71
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  3. Asahina M,Satoh S
    Molecular and physiological mechanisms regulating tissue reunion in incised plant tissues.
    J. Plant Res., 2015. 128(3): p. 381-8
    [PMID:25736731]
  4. Matsuoka K, et al.
    Differential Cellular Control by Cotyledon-Derived Phytohormones Involved in Graft Reunion of Arabidopsis Hypocotyls.
    Plant Cell Physiol., 2016. 57(12): p. 2620-2631
    [PMID:27986917]