PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g098870.3
Common NameMTR_4g098870
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ARR-B
Protein Properties Length: 576aa    MW: 64320.7 Da    PI: 5.5857
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g098870.3genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like85.65.1e-27330384156
          G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRla 56 
                      k +++WtpeLH++Fv+aveqL G+++A+P++il+lmkv+gLt+++v+SHLQk+R++
  Medtr4g098870.3 330 KMKVDWTPELHKKFVKAVEQL-GIDHAIPSRILDLMKVEGLTRHNVASHLQKFRMH 384
                      5689*****************.********************************96 PP
2Response_reg27.71.3e-10401461109
                      EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH..HHHHESEEEEESSCTT.SEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHH CS
     Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealell..kekdpDlillDiempg.mdGlellkeireeepklpiivvtahgeeedalealk 91 
                      vl+ + +++  + +r+ le  +y +v  + d  eal  +  + +d+++ ++ ++ +    G+++l+   +++ +lp i+ + ++  +++ +++ 
  Medtr4g098870.3  40 VLLLEGDNTSVSEIRVKLEAMDY-NVSIFCDVNEALSAVssRPEDFHIAIVEVSSSScEGGFRFLE---NAK-DLPTIMTSNSDCLNTMMKCIA 128
                      67778888888999999******.***************555555999999999999445555554...444.799999998888********* PP

                      TTESEEEESS--HHHHHH CS
     Response_reg  92 aGakdflsKpfdpeelvk 109
                      +Ga +flsKp ++++l++
  Medtr4g098870.3 129 LGAVEFLSKPLSEDKLRN 146
                      ***************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.12E-1436154IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23003.6E-1536187No hitNo description
SMARTSM004480.004438148IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011019.75339152IPR001789Signal transduction response regulator, receiver domain
PfamPF000724.6E-740147IPR001789Signal transduction response regulator, receiver domain
CDDcd001564.44E-741151No hitNo description
PROSITE profilePS5129414.485327386IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-26328386IPR009057Homeodomain-like
SuperFamilySSF466891.25E-17329387IPR009057Homeodomain-like
TIGRFAMsTIGR015576.0E-24330385IPR006447Myb domain, plants
PfamPF002497.7E-7333381IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MVLQKELDVD ESLRKDAKPA MVCTANDLQE WKDFPKGLKV LLLEGDNTSV SEIRVKLEAM  60
DYNVSIFCDV NEALSAVSSR PEDFHIAIVE VSSSSCEGGF RFLENAKDLP TIMTSNSDCL  120
NTMMKCIALG AVEFLSKPLS EDKLRNIWQH VVHKAFNAGV SALSESLKPV KESVASILQI  180
QTDNEQNESK ASVELEQVLR SSDNDHHEHY PAPSTPQLKQ VGRLLDDGDC QEQTNCSTEK  240
ESGEHDGESK SVEITCENLN AESITQQTKS EATLVQKEEE EFADASKCES VVSPQLPNVK  300
VLNNSESNTT SANKVVVRSH KCEIKANRKK MKVDWTPELH KKFVKAVEQL GIDHAIPSRI  360
LDLMKVEGLT RHNVASHLQK FRMHKRHILP KQEDRKWLNP RDPTQRNYCL QRPIMPGPPS  420
YYSNHTLPPL APLYPMWGQS GTQTAGMQVW GHSGYPVWQP TESWHWKPFP GMHPDAWGCP  480
VLPPPQPPCY SYSQDIPAVS NANAMDYTFS MMLHSSFDDY PAEEVIDNVV KEAISKPWLP  540
LPIGLKPPST DSVLAELSRQ GISSIPPSYN GSIPY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A2e-16328383358ARR10-B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.99510.0flower| root| seed| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]GATT-3'. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g098870.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-45AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457528.10.0two-component response regulator-like APRR2
RefseqXP_024638401.10.0two-component response regulator-like APRR2
SwissprotQ6LA431e-139APRR2_ARATH; Two-component response regulator-like APRR2
TrEMBLA0A072V0B20.0A0A072V0B2_MEDTR; Two-component response regulator-APRR2-like protein
STRINGXP_004508999.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18020.61e-138ARR-B family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Gong L, et al.
    Transcriptome Profiling of the Potato (Solanum tuberosum L.) Plant under Drought Stress and Water-Stimulus Conditions.
    PLoS ONE, 2015. 10(5): p. e0128041
    [PMID:26010543]