PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g099070.2

Common Name

MTR_4g099070

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

SRS

Protein Properties

Length: 359aa MW: 39598.1 Da PI: 6.0933

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g099070.2	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	23.9	1.1e-07	34	73	3	41
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathv.ks 41 +++ +C++CGn a+ C +e+C+ CC + C hv k+ Medtr4g099070.2 34 QNKPKCKQCGNVARSRCPYEQCKSCCSKNQNPCPIHVlKA 73 56679*******************************9444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.6E-4	38	77	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 359 aa Download sequence Send to blast
MATAPSNNST AKVGTLGLTN SPMSSSAPKS QRGQNKPKCK QCGNVARSRC PYEQCKSCCS 60 KNQNPCPIHV LKASTIPDNT PSSGAAPLDR KSFEPPPSIA GRAASLRQLS NSFAQFNNLH 120 LSLRSKKPLT RKDAAAINEW RFSKLKEYKE RNVDAENEAF DRYMQNVDLL EEVLSVKQSD 180 EDVSSASEAN QTSTENSEVM IPGLKLQLRS NSTRSDGVRI RIKKTVDDGL KKLKCAVDGD 240 SNNEEIDEVS ESSNKRKRTE KLSAISDLLD KINKARSEED LQSCLEVKLQ LFNSDEDSAM 300 VQHTDNEMHQ NQTAEGDAVP AKELDYSLPK LVGSSEIDQE TLNIIDKHFS SLEYVEQL*

Sequence ? help Back to Top

Protein Sequence Length: 359 aa Download sequence Send to blast

MATAPSNNST AKVGTLGLTN SPMSSSAPKS QRGQNKPKCK QCGNVARSRC PYEQCKSCCS  60
KNQNPCPIHV LKASTIPDNT PSSGAAPLDR KSFEPPPSIA GRAASLRQLS NSFAQFNNLH  120
LSLRSKKPLT RKDAAAINEW RFSKLKEYKE RNVDAENEAF DRYMQNVDLL EEVLSVKQSD  180
EDVSSASEAN QTSTENSEVM IPGLKLQLRS NSTRSDGVRI RIKKTVDDGL KKLKCAVDGD  240
SNNEEIDEVS ESSNKRKRTE KLSAISDLLD KINKARSEED LQSCLEVKLQ LFNSDEDSAM  300
VQHTDNEMHQ NQTAEGDAVP AKELDYSLPK LVGSSEIDQE TLNIIDKHFS SLEYVEQL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g099070.2

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013457553.1	0.0	uncharacterized protein LOC25493568 isoform X2
TrEMBL	A0A072UP12	0.0	A0A072UP12_MEDTR; Electron carrier/iron ion-binding protein, putative
STRING	XP_004508981.1	0.0	(Cicer arietinum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	4e-91

Link Out ? help Back to Top
Phytozome	Medtr4g099070.2
Entrez Gene	25493568

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]