PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g102660.1
Common NameMTR_4g102660
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 221aa    MW: 24874.1 Da    PI: 7.4554
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g102660.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.31.9e-184295155
              AP2  1 sgykGV.rwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                     + y+GV r++ ++++Wv+e+r+p   + k++r++lg++ t+e+Aa+a++ a+++l+g
  Medtr4g102660.1 42 PVYRGVrRRNNNNNKWVCEVRVP---NdKSTRIWLGTYPTPEMAARAHDVAALALRG 95
                     68****777778888*******9...6678*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-134295IPR001471AP2/ERF domain
SMARTSM003809.8E-2243109IPR001471AP2/ERF domain
SuperFamilySSF541714.58E-2043105IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.9E-2943105IPR001471AP2/ERF domain
PROSITE profilePS5103221.90443103IPR001471AP2/ERF domain
PRINTSPR003672.3E-54455IPR001471AP2/ERF domain
CDDcd000181.88E-2244105No hitNo description
PRINTSPR003672.3E-56985IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MKSSLDESSY VENNSSSSEI LLASEQPKKR AGRRKFKETR HPVYRGVRRR NNNNNKWVCE  60
VRVPNDKSTR IWLGTYPTPE MAARAHDVAA LALRGKSACL NFADSAWRLA LPATNNAKEI  120
RKMAAEAALA FAVVADSKEQ TMISNCDVNS VGVMEVDNKP LQGLCVEVPE EEMLHDWFRS  180
MADEPLRSPI TPFIRHGRDQ WNNVDIDQVD AEVSLWNFTI *
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.118860.0glandular trichome| root
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid- and dehydration-inducible transcription. CBF/DREB1 factors play a key role in freezing tolerance and cold acclimation. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g102660.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress, drought stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:12376631}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457668.11e-163dehydration-responsive element-binding protein 1E
SwissprotQ9FJ931e-55DRE1D_ARATH; Dehydration-responsive element-binding protein 1D
TrEMBLA0A072UPC71e-162A0A072UPC7_MEDTR; Dehydration-responsive element-binding protein
STRINGXP_004515794.11e-103(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF24333224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51990.16e-37C-repeat-binding factor 4
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Guttikonda SK, et al.
    Overexpression of AtDREB1D transcription factor improves drought tolerance in soybean.
    Mol. Biol. Rep., 2014. 41(12): p. 7995-8008
    [PMID:25192890]
  4. Zhang T, et al.
    Overexpression of a NF-YB3 transcription factor from Picea wilsonii confers tolerance to salinity and drought stress in transformed Arabidopsis thaliana.
    Plant Physiol. Biochem., 2015. 94: p. 153-64
    [PMID:26093308]
  5. Carlow CE, et al.
    Nuclear localization and transactivation by Vitis CBF transcription factors are regulated by combinations of conserved amino acid domains.
    Plant Physiol. Biochem., 2017. 118: p. 306-319
    [PMID:28675818]
  6. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]