PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g102670.1
Common NameMTR_4g102670
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family ERF
Protein Properties Length: 169aa    MW: 18427.6 Da    PI: 4.8032
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g102670.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP243.29.5e-141562355
              AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r  ++ g+Wv eIr+p++   + r++lg+f t+e+Aa+a++ a ++l+g
  Medtr4g102670.1 15 YHGIR--SRGGKWVTEIREPRK---TNRIWLGTFPTPEMAAAAYDVATLALKG 62
                     88995..779*********854...49*******************9998876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103219.0721470IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-171472IPR016177DNA-binding domain
SMARTSM003802.0E-241476IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.4E-251472IPR001471AP2/ERF domain
PfamPF008477.6E-81562IPR001471AP2/ERF domain
CDDcd000181.26E-231572No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MASSSSSSSK RHPTYHGIRS RGGKWVTEIR EPRKTNRIWL GTFPTPEMAA AAYDVATLAL  60
KGGDAVLNFP NSASKYPVPA SNSPDDIRSA ATAAAELTAA EAVNNDAGLN GRPWYETEFL  120
DEEAIFSMPR LMVEMAEGML LSPPRMNPPP SEYLPEYYTS GESLWSYY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-12171173Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00558DAPTransfer from AT5G52020Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g102670.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457669.11e-120ethylene-responsive transcription factor ERF026
SwissprotQ9FJ902e-44ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLA0A072V0P01e-118A0A072V0P0_MEDTR; Ethylene response factor
STRINGXP_004515795.12e-79(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.12e-40ERF family protein
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]