PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g102720.1

Common Name

MTR_4g102720

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

FAR1

Protein Properties

Length: 225aa MW: 26227.3 Da PI: 10.1709

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g102720.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.9	5.3e-21	21	96	1	78
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwev 78 kfYn+Y+ +vGF vrk++s+k+k+n it++ fvCskeg r+++k++ k+ ++r+etrt+Ckakl++k++ + ++ Medtr4g102720.1 21 KFYNDYGGKVGFGVRKQYSHKNKNNI-ITSYMFVCSKEGLRKPDKQN-YKTINPRQETRTNCKAKLNIKNMGGKFMQI 96 6******************96655.*************999.9******************997666665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.4E-17	21	94	IPR004330	FAR1 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MEEDWKPKLK MIFDSVEDAW KFYNDYGGKV GFGVRKQYSH KNKNNIITSY MFVCSKEGLR 60 KPDKQNYKTI NPRQETRTNC KAKLNIKNMG GKFMQIDLAD DAGLQQRKSF DLMSKEVGGR 120 SNLGFTRSEK RKVLAMARIM KSYEKSKFTT ITRINQSHEF ELQNLQIMPR LVLERQALLI 180 SRYEVLNLEK AAFEVEDYHQ ATIELIQKAL SDKYNTLKLI DGMR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g102720.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC146333	1e-115	AC146333.35 Medicago truncatula clone mth2-8d3, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024630666.1	3e-51	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024630798.1	3e-51	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024632861.1	3e-51	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024634855.1	3e-51	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_024634870.1	3e-51	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A072URK7	1e-166	A0A072URK7_MEDTR; FAR1 DNA-binding domain protein
STRING	AES87711	6e-49	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3045	14	49

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59470.2	7e-10	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Medtr4g102720.1
Entrez Gene	25493652

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]