PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g107320.1
Common NameMTR_4g107320
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family bHLH
Protein Properties Length: 142aa    MW: 16234.5 Da    PI: 6.6819
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g107320.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.24e-05601001255
                      HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      RR++i +++  L +l+P     ++    K  +L + ++YI+sLq
  Medtr4g107320.1  60 RREKISERIKMLEDLVPRY---TKLVIGKTLMLYEIINYIQSLQ 100
                      ******************9...777799999************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508888.8424899IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.82E-460104No hitNo description
SuperFamilySSF474595.76E-960116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-860104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MDEEKMKEEE KVSTATLAYP YSQMGSGSKT KESLNFEGES TSFFLTGGYT KSPPNGRGER  60
REKISERIKM LEDLVPRYTK LVIGKTLMLY EIINYIQSLQ HQVEIHAYVF SIFLHERINF  120
ILNMHSSIDC FPSKDHASLS N*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g107320.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020978913.12e-19transcription factor bHLH79 isoform X2
RefseqXP_020997815.12e-19transcription factor bHLH79 isoform X3
RefseqXP_025603162.12e-19transcription factor bHLH79 isoform X3
RefseqXP_025629224.12e-19transcription factor bHLH79 isoform X2
SwissprotQ9SRT22e-15BH062_ARATH; Transcription factor bHLH62
TrEMBLA0A072US611e-100A0A072US61_MEDTR; Basic helix loop helix (BHLH) DNA-binding superfamily protein, putative
STRINGAES786131e-101(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G07340.19e-18bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]