PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g107970.2
Common NameMTR_4g107970
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family WRKY
Protein Properties Length: 537aa    MW: 58570.8 Da    PI: 7.904
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g107970.2genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY955.3e-30177236159
                      ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      ++Dg++WrKYGqK  kg+++pr+YYrCt a +Cpv+k+v+r+ ed +++++tYeg+Hnh+
  Medtr4g107970.2 177 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVApSCPVRKQVQRCVEDMSILITTYEGTHNHS 236
                      58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.2E-31162238IPR003657WRKY domain
SuperFamilySSF1182904.18E-27170238IPR003657WRKY domain
PROSITE profilePS5081127.933172238IPR003657WRKY domain
SMARTSM007741.1E-35177237IPR003657WRKY domain
PfamPF031063.2E-26178235IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 537 aa     Download sequence    Send to blast
MGEVREENQR LKMCLNKIMT EYRALEMQFN NMVKQETKKN NDNNHEEMNA ESDLVSLSLG  60
RVPSNNIPKN DQEKVNKVSK LALNNDEEFN KEELSLGLEC KFETSKSGST TEGLPNIPSP  120
VNSSEVVPIK NDEVVETWPP SKTLNKTMRD AEDEVAQQTP AKKARVCVRA RCDTPTMNDG  180
CQWRKYGQKI AKGNPCPRAY YRCTVAPSCP VRKQVQRCVE DMSILITTYE GTHNHSLPLS  240
ATAMASTTSA AASMLLSGSS TSNSGSMPSA QTNNNLHGLN FYLPDGTKSN QLYLSNPALS  300
SQHSHPTITL DLTSNPSNSS TSSPFVRFNS SYNNNNQLPR YPSSTLSFSS PESNPMHWNS  360
FLNYATTQNQ PYSNNRNNNN LSTLNFGRQN TMESIYQTYM QKNNNSSNIS QHVGLQDSTI  420
SAATKAITAD PTFQSALAAA LSSLIGNTTN QGNQNQSAGE NLSQKMKWAE MFQVSSTSLP  480
SSSSKVNGCA SSFLNKTAPV NNTQNGSLML LSPSLPFSAT KSASTSPGGD NSDNTN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21164238174WRKY transcription factor 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Mtr.64880.0root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, trichomes and fruits. {ECO:0000269|PubMed:24884371}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator involved in the transcriptional regulation of terpene biosynthesis in glandular trichomes (PubMed:24884371). Binds to the promoter of the linalool synthase TPS5 and promotes TPS5 gene transactivation (PubMed:24884371). In association with WRKY72B, contributes to basal defense against root-knot nematodes (RKNs) and potato aphids, as well as Mi-1-mediated gene-for-gene resistance to these pests (PubMed:20409007). Both WRKY72A and WRKY72B are not required for gene-for-gene resistance mediated by Pto, another tomato R gene (PubMed:20409007). {ECO:0000269|PubMed:20409007, ECO:0000269|PubMed:24884371}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g107970.2
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by infection with the root-knot nematode (RKN) Meloidogyne incognita and potato aphids. {ECO:0000269|PubMed:20409007}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1227260.0AC122726.22 Medicago truncatula chromosome 8 clone mth2-23o24, complete sequence.
GenBankAC1467760.0AC146776.43 Medicago truncatula chromosome 8 clone mth2-125i24, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609019.10.0probable WRKY transcription factor 72
SwissprotA0A3Q7GFB51e-119WK72A_SOLLC; WRKY transcription factor 72A
TrEMBLG7JPY70.0G7JPY7_MEDTR; Putative transcription factor WRKY family
STRINGAES912160.0(Medicago truncatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.12e-66WRKY DNA-binding protein 72
Publications ? help Back to Top
  1. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  2. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  3. Spyropoulou EA,Haring MA,Schuurink RC
    RNA sequencing on Solanum lycopersicum trichomes identifies transcription factors that activate terpene synthase promoters.
    BMC Genomics, 2014. 15: p. 402
    [PMID:24884371]