PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g108360.1

Common Name

MTR_4g108360

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

bHLH

Protein Properties

Length: 247aa MW: 27270.1 Da PI: 5.4214

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g108360.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	12	0.0004	51	100	1	54
CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +r + erE+ R+++N+ f L l + + + Ka+iL +A + +k+L Medtr4g108360.1 51 KRIHKAEREKMKREHLNELFLDLANALDLS----EPNNGKASILIEASRLLKDL 100 688899*******************987....67799999**99999887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	5.1E-10	48	116	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.26E-5	48	105	No hit	No description
Gene3D	G3DSA:4.10.280.10	4.6E-5	50	117	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	9.737	50	100	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010106	Biological Process	cellular response to iron ion starvation
GO:0055072	Biological Process	iron ion homeostasis
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEIKVRKIVA EELKTGIAGF VHMGSESVAP MIEPSNNRSD PGTMKQGKVP KRIHKAEREK 60 MKREHLNELF LDLANALDLS EPNNGKASIL IEASRLLKDL LCQIQSLKKE NVSLLSESHY 120 VTMEKNELKE ENSSLETQIE KLQGEIQARI AQSKPDLNAP PQLELESPEQ TTFSGQSFQL 180 PTVDPTLQQG PTVLVVPFRP DLQAAYPAPT EITPNPPLVI SKPHARYPTP ADSWPSQLLG 240 EQPTSS*

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.11923	0.0	leaf\| root\| seed

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269\|PubMed:12679534}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g108360.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT052086	0.0	BT052086.1 Medicago truncatula clone MTYF9_FA_FB_FC1G-F-2 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024636690.1	1e-162	transcription factor bHLH47
Swissprot	Q9SN74	2e-59	BH047_ARATH; Transcription factor bHLH47
TrEMBL	G7JQY2	1e-178	G7JQY2_MEDTR; BHLH transcription factor
STRING	AES91249	1e-161	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8223	25	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G47640.3	8e-62	bHLH family protein

Link Out ? help Back to Top
Phytozome	Medtr4g108360.1
Entrez Gene	11438092

Publications ? help Back to Top
Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132] Rodríguez-Celma J, et al. The transcriptional response of Arabidopsis leaves to Fe deficiency. Front Plant Sci, 2013. 4: p. 276 [PMID:23888164] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Martínez-Trujillo M, et al. Chromate alters root system architecture and activates expression of genes involved in iron homeostasis and signaling in Arabidopsis thaliana. Plant Mol. Biol., 2014. 86(1-2): p. 35-50 [PMID:24928490] Li H,Wang L,Yang ZM Co-expression analysis reveals a group of genes potentially involved in regulation of plant response to iron-deficiency. Gene, 2015. 554(1): p. 16-24 [PMID:25300251] Liang G,Zhang H,Li X,Ai Q,Yu D bHLH transcription factor bHLH115 regulates iron homeostasis in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(7): p. 1743-1755 [PMID:28369511] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]