PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Medtr4g108760.1

Common Name

MTR_4g108760

Organism

Medicago truncatula

Taxonomic ID

3880

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago

Family

NAC

Protein Properties

Length: 360aa MW: 40556.6 Da PI: 8.5302

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Medtr4g108760.1	genome	Mt	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.2	2.6e-56	17	143	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+++yL kkv ++++++ ++i +vd++k+ePwdLp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ Medtr4g108760.1 17 LPPGFRFHPTDEELISHYLYKKVIDSNFSA-RAIGDVDLNKSEPWDLPFKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIFK 109 79************************99.89***********99999************************************* PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfykgrapkgek++Wvmheyrle Medtr4g108760.1 110 -GKSLVGMKKTLVFYKGRAPKGEKSNWVMHEYRLE 143 .999***************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.14E-64	12	167	IPR003441	NAC domain
PROSITE profile	PS51005	59.891	17	167	IPR003441	NAC domain
Pfam	PF02365	1.4E-29	18	142	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 360 aa Download sequence Send to blast
MENVSVLSNK EDEKMDLPPG FRFHPTDEEL ISHYLYKKVI DSNFSARAIG DVDLNKSEPW 60 DLPFKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIFKG KSLVGMKKTL 120 VFYKGRAPKG EKSNWVMHEY RLEGKFSVHN LPKAAKNEWV ICRVFQKSSA GKKTHISGIM 180 RLDSLGNEFG CSVLPPLTDS SNSIGKIKQL NDSAYVSCFS NSIDVQRNQG GIFDSFNNSI 240 YGISSHNQLD FFPRISSSNG SLYSNNQAAV NLQYPSSVCG MQDQAILRAL YENNGFKTER 300 QQQIMSVSQE TDLTTDMNAE TCSVVSNLDI GRRTFENNQN RPPPASVAAV DFDGNLWNY*

Sequence ? help Back to Top

Protein Sequence Length: 360 aa Download sequence Send to blast

MENVSVLSNK EDEKMDLPPG FRFHPTDEEL ISHYLYKKVI DSNFSARAIG DVDLNKSEPW  60
DLPFKAKMGE KEWYFFCVRD RKYPTGLRTN RATEAGYWKA TGKDKEIFKG KSLVGMKKTL  120
VFYKGRAPKG EKSNWVMHEY RLEGKFSVHN LPKAAKNEWV ICRVFQKSSA GKKTHISGIM  180
RLDSLGNEFG CSVLPPLTDS SNSIGKIKQL NDSAYVSCFS NSIDVQRNQG GIFDSFNNSI  240
YGISSHNQLD FFPRISSSNG SLYSNNQAAV NLQYPSSVCG MQDQAILRAL YENNGFKTER  300
QQQIMSVSQE TDLTTDMNAE TCSVVSNLDI GRRTFENNQN RPPPASVAAV DFDGNLWNY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	1e-54	14	173	17	174	NAC domain-containing protein 19
3swm_B	1e-54	14	173	17	174	NAC domain-containing protein 19
3swm_C	1e-54	14	173	17	174	NAC domain-containing protein 19
3swm_D	1e-54	14	173	17	174	NAC domain-containing protein 19
3swp_A	1e-54	14	173	17	174	NAC domain-containing protein 19
3swp_B	1e-54	14	173	17	174	NAC domain-containing protein 19
3swp_C	1e-54	14	173	17	174	NAC domain-containing protein 19
3swp_D	1e-54	14	173	17	174	NAC domain-containing protein 19
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Mtr.12356	0.0	leaf\| pod\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Medtr4g108760.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT051637	0.0	BT051637.1 Medicago truncatula clone MTYF5_F6_F7_F81G-M-19 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013457910.1	0.0	NAC domain-containing protein 100
Swissprot	Q9FLJ2	1e-144	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	A0A072URG4	0.0	A0A072URG4_MEDTR; NAC transcription factor-like protein
STRING	XP_004508725.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	1e-146	NAC domain containing protein 100

Link Out ? help Back to Top
Phytozome	Medtr4g108760.1
Entrez Gene	25493826

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Young ND, et al. The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature, 2011. 480(7378): p. 520-4 [PMID:22089132]