PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Medtr4g109810.1
Common NameMTR_4g109810
Organism
Medicago truncatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Medicago
Family MIKC_MADS
Protein Properties Length: 243aa    MW: 27703.3 Da    PI: 7.2723
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Medtr4g109810.1genomeMtView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF97.84.3e-31959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krienk nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye+ss
  Medtr4g109810.1  9 KRIENKVNRQVTFAKRRNGVLKKAYELSVLCDAEVALIIFSNRGKLYEFSS 59
                     79***********************************************96 PP
2K-box85.41.2e-28811729100
            K-box   9 leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkklee 100
                      ++ a+    +qe+ +Lk+ +e Lqr+qR+llGed+ +++  eL+q+e++Le +lk+iRs+K++++l+q+++l  +e  l e+n++Lr+klee
  Medtr4g109810.1  81 NQPANDTPNYQEYVRLKAHVEILQRSQRNLLGEDIAQMNTGELEQIENHLEAALKSIRSTKTQFMLDQLNDLHYRETVLVETNNDLRSKLEE 172
                      44455566799******************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006633.571161IPR002100Transcription factor, MADS-box
SMARTSM004323.1E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.63E-34285IPR002100Transcription factor, MADS-box
CDDcd002651.53E-43278No hitNo description
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-32323IPR002100Transcription factor, MADS-box
PfamPF003191.2E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-322338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-323859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129713.22186176IPR002487Transcription factor, K-box
PfamPF014865.2E-2488170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 243 aa     Download sequence    Send to blast
MGRGRVELKR IENKVNRQVT FAKRRNGVLK KAYELSVLCD AEVALIIFSN RGKLYEFSST  60
SCMMKTLEKY HKYSYNELET NQPANDTPNY QEYVRLKAHV EILQRSQRNL LGEDIAQMNT  120
GELEQIENHL EAALKSIRST KTQFMLDQLN DLHYRETVLV ETNNDLRSKL EETDNLQVPG  180
RILALEAGGS NFHHAPFPSQ SDRFFHHVGV NSNLQIGYNP MGSADGASSL RMNGFDAMTW  240
ML*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ox0_A5e-24751701101Developmental protein SEPALLATA 3
4ox0_B5e-24751701101Developmental protein SEPALLATA 3
4ox0_C5e-24751701101Developmental protein SEPALLATA 3
4ox0_D5e-24751701101Developmental protein SEPALLATA 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers and seeds. {ECO:0000269|Ref.1}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapMedtr4g109810.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458015.10.0truncated transcription factor CAULIFLOWER A isoform X1
SwissprotQ8LLR22e-91MADS2_VITVI; Agamous-like MADS-box protein MADS2
TrEMBLA0A072URR10.0A0A072URR1_MEDTR; MADS-box transcription factor
STRINGXP_007155209.11e-131(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF22932178
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15800.14e-80MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Young ND, et al.
    The Medicago genome provides insight into the evolution of rhizobial symbioses.
    Nature, 2011. 480(7378): p. 520-4
    [PMID:22089132]
  4. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]